Gene detail

Detailed information of gfas1.m1.7976.m1 in Galaxea fascicularis

Genomic Location: Sc0000609:76962...82975
NR annotation: XP_044181965.1, rho-related BTB domain-containing protein 1-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.7976.m1

ATGGCTTCGCCGAATTCTAGACACTTGGTGAACGCTTTGAAATTAGTTCTTGTCGGTGATGCAAAAGTCGGGAAAACTTGGCTGCTTCTTCGGGGACAAGAGCTGTACGTAACGTTGTACGATGGCTACAGCCTCCTCACAAAGCCGTTTGATCCGGCAATATTGTACACGCCAACAGCGTTTGAAACTTGTTTTACGAATGTCGACACTACAGCTCTCGGCAACTACCAGACGAACATCTGGGACACTGGAGGATGTGCATTTTTTAATTTCGCACGCCCCCTGGCCTACATTTGTGCTGATGTCTTCATGTTGTGTTTTGATTTGACCAGCCGGGAGTCGTTTAACAGCATAACAAAAAGATGGATGCCTGAACTTCGCAACTATCAGCCCAAGACGCCAGTTCTTATTATTGGCACAAAGTCTGATCTTCGAGATGAATATGAAAGCAGTGGCTCTGGGGATTTTGTATCACACGAGGAAGCCCAAAATACTGCTAAGGACATGGGTTGCCTGTACCAGGAAACCAGTGCAAAAACTGGAGACCTTGTTCCTAATGTGTTTGAGGCAGCTGTGCAACTTGGACACACAAAAAGACAAGAAGAGGCTTGGCAGTTGCAGAGGGAAAAAGTAATCAATAATGGCTTTGATCCAACCTGGATTCCATCAGTGAAACCTCCTCCAGAACTGGAGACTGAACCCTCCACTTATACCCATGATCTCAGGAAAGTCTTACACGACACCAGAAATGCTGACCTCCTATTTGAGTTTGAAGATGGAAGCCAAAGTATCTCTGCACATAAAATTGTTTTGTGGCTGACTCCATCTGTTTTTAAAGATGTTTTGCAAGAAACAACTACCAGCAACTGTGAAAAATTTAAGGAACTTTTTGAGGTGTTTGAATTCTGTGAGGATTCTAGGCCATCAATGCTGGAATATGACTTTGATGGTTACAAAACATGCCCACAAATGAAAACTGCCATAGTTTTCAGGAACTGGATTTCCAGGGAAACCTTTACAAAGGTTTTAGAATTCTTGTACACTGGAGAGGCAGGAATTTCAAGAGATACAGAGCAAGACAAAATCAAGGAACTTGTGACGGCTTCAAAGAAATTAAAAGTTCAATCACTTGAGGATATTTGCAACTATTTTCTTAAACTTGCTGATTCAAAGAAAGATGGTGATGATCAAAAGAAATCACAAGCTTCAAACAGTGGCTGCAAAAAGCTTCAGAAACCCACAGCATCACCACGGAGTGTGCAGAATCTGTTTCTCAACAAAGACACAACATTGTTTTCTTATATAACATTTCTTTTGGGAGACAATCTGGTTTATGCACACAAGGTGATTTTGGTTGGGCGGTCTCCTGTTTTTGCTGCCCTTCTGAGTGATAATTTCAGGGAAGGGAGTAGTTCCCAGGTGCACTTACAAGGAATTGATTGCCATAGTTTCTTGGCGGTGTTGGAGTATCTTTACACTGATTACTGCACTGCTCTGGAGAAAATTCCTGTGGAGAATGTGCTCATCCTTGCTGACCAGTTGTGTCTCTCTCGCTTGGTGCAGATTTGTGAGAAATCCATGTGCAAAGATCTGCAGGAAGTTGCAATGCAGACCTCCTTGGCCCTTGGTAATGAGTTTGTGGATCATACTCGCAAAGATCTGCAGGAGGTTACTGGGAAGGCCTCCCTGCCTCTAGTTAATGACTTTGTGGATGCTCTATCCCTCGCTAAGATGTTCAACGCAAATCAGCTTTCCATGTGGTGTCTGTACTTTGTTGCCGCCAACCACACACGTTTCTGTGGCAAGAGCAAAGAACTGGACTCCATTATCAAAGAAAACAAGGAGTTCTTTAAACATCACTGCTGGCCACCTAAGGACTACTTGCAGGCTTTGGAGGAATACAAGCAAAGGGGCAAAGGAATCACGCCTCTCGCAAGAAGACTGGGTCGTAAAAAGCGTTCCTGTTTGCCTCGTGTTAAGTGCAGACTTATGTAG

Transcript

gfas1.m1.7976.m1

ATTACATCATTTTTCAACGATTTCATTGGTTGGCTATTTTTGAAGTTGATCGCAGTATAAAACCAAAATGGTTGACCGGGATAAACCGTGTCAAATCGCAGTATTTAAGCAGAAGTTCATTATGGGGAATCTCTGCAGAGATCGCAATCGATTGCAAATCTTCCGCAACACAGATTCATGGCTTCGCCGAATTCTAGACACTTGGTGAACGCTTTGAAATTAGTTCTTGTCGGTGATGCAAAAGTCGGGAAAACTTGGCTGCTTCTTCGGGGACAAGAGCTGTACGTAACGTTGTACGATGGCTACAGCCTCCTCACAAAGCCGTTTGATCCGGCAATATTGTACACGCCAACAGCGTTTGAAACTTGTTTTACGAATGTCGACACTACAGCTCTCGGCAACTACCAGACGAACATCTGGGACACTGGAGGATGTGCATTTTTTAATTTCGCACGCCCCCTGGCCTACATTTGTGCTGATGTCTTCATGTTGTGTTTTGATTTGACCAGCCGGGAGTCGTTTAACAGCATAACAAAAAGATGGATGCCTGAACTTCGCAACTATCAGCCCAAGACGCCAGTTCTTATTATTGGCACAAAGTCTGATCTTCGAGATGAATATGAAAGCAGTGGCTCTGGGGATTTTGTATCACACGAGGAAGCCCAAAATACTGCTAAGGACATGGGTTGCCTGTACCAGGAAACCAGTGCAAAAACTGGAGACCTTGTTCCTAATGTGTTTGAGGCAGCTGTGCAACTTGGACACACAAAAAGACAAGAAGAGGCTTGGCAGTTGCAGAGGGAAAAAGTAATCAATAATGGCTTTGATCCAACCTGGATTCCATCAGTGAAACCTCCTCCAGAACTGGAGACTGAACCCTCCACTTATACCCATGATCTCAGGAAAGTCTTACACGACACCAGAAATGCTGACCTCCTATTTGAGTTTGAAGATGGAAGCCAAAGTATCTCTGCACATAAAATTGTTTTGTGGCTGACTCCATCTGTTTTTAAAGATGTTTTGCAAGAAACAACTACCAGCAACTGTGAAAAATTTAAGGAACTTTTTGAGGTGTTTGAATTCTGTGAGGATTCTAGGCCATCAATGCTGGAATATGACTTTGATGGTTACAAAACATGCCCACAAATGAAAACTGCCATAGTTTTCAGGAACTGGATTTCCAGGGAAACCTTTACAAAGGTTTTAGAATTCTTGTACACTGGAGAGGCAGGAATTTCAAGAGATACAGAGCAAGACAAAATCAAGGAACTTGTGACGGCTTCAAAGAAATTAAAAGTTCAATCACTTGAGGATATTTGCAACTATTTTCTTAAACTTGCTGATTCAAAGAAAGATGGTGATGATCAAAAGAAATCACAAGCTTCAAACAGTGGCTGCAAAAAGCTTCAGAAACCCACAGCATCACCACGGAGTGTGCAGAATCTGTTTCTCAACAAAGACACAACATTGTTTTCTTATATAACATTTCTTTTGGGAGACAATCTGGTTTATGCACACAAGGTGATTTTGGTTGGGCGGTCTCCTGTTTTTGCTGCCCTTCTGAGTGATAATTTCAGGGAAGGGAGTAGTTCCCAGGTGCACTTACAAGGAATTGATTGCCATAGTTTCTTGGCGGTGTTGGAGTATCTTTACACTGATTACTGCACTGCTCTGGAGAAAATTCCTGTGGAGAATGTGCTCATCCTTGCTGACCAGTTGTGTCTCTCTCGCTTGGTGCAGATTTGTGAGAAATCCATGTGCAAAGATCTGCAGGAAGTTGCAATGCAGACCTCCTTGGCCCTTGGTAATGAGTTTGTGGATCATACTCGCAAAGATCTGCAGGAGGTTACTGGGAAGGCCTCCCTGCCTCTAGTTAATGACTTTGTGGATGCTCTATCCCTCGCTAAGATGTTCAACGCAAATCAGCTTTCCATGTGGTGTCTGTACTTTGTTGCCGCCAACCACACACGTTTCTGTGGCAAGAGCAAAGAACTGGACTCCATTATCAAAGAAAACAAGGAGTTCTTTAAACATCACTGCTGGCCACCTAAGGACTACTTGCAGGCTTTGGAGGAATACAAGCAAAGGGGCAAAGGAATCACGCCTCTCGCAAGAAGACTGGGTCGTAAAAAGCGTTCCTGTTTGCCTCGTGTTAAGTGCAGACTTATGTAGCGGAGCTGTTTGAGTGTTAAATGAAGTTGCTCGGTAAATCTTGTAGTGTTATTTTCAGTAAGCTTTAGGAAGAAGTTGTTGTCCTTTTCATGAATTATCCCTGAAAACTGCAGGAAATACAGTGTGTGAGGTATATTAAATCACTCATGCATATGAACTGCGGAAATGAAATGAAATGAAGAATGATCTTCGCAGTTGTGAATGCAAGTTATGCAAATTCTGTAAAGAAGCCTTTAAAAAGCATTTAGTACTAGGGACTGGGACATTGTTTTAAGTGATCTTTAGATTTTTTATTTTTTTAACCAGTCACCTGTACAGAACTGTCTGCAATCAGTTAGTTTTCACCAGCAGATAACTGAGGAAATGGAAGAAACGAGGTAAATGTCAGAAGTGATTAACAAAGCTTTCGAAGTAGATTTCAAAAGGTGGTGCTCCATCTTTTCCACTCGAATCTGAAGGTCATTGTTCTCTTTCATGGTAAAACACACTTCCTTTTGGATTTTTTGTAATTTCATTTCATTTCGTGTTAGTGAAATGTGAAGTACGTTTGATCATGAGACAACCATTGCCGAGAGCTATCGCGGTCTCTGCTGGTCGGAGTTTTTCTCATGGTGTGGTGAAATTTTCTCAAAGGTGTGAACAATCGTTTTTGAGGAACGTACGTTCAGATCATTTAGATTACGAGAAAAAGCCGCTGATGCATTTTGTCGAAGCAACACACTTTGGATAGAACTCTGTAATGATTTTTACAACAGATTCTTCAACAGTTGAATCAATGCTTACGGGATCTTTTATGCGTTCTGCTGGTCAGGAATTAAGTTTTAGGTCTTAAGAATTCAAGTGATTAATTCTCAGAGGATGTGTGTGCTAAAGCTTGCGATAAAGAAAACCAATTTACGCTTTACTGGAAACGAAGTCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34147	Rho-related protein racA OS=Dictyostelium discoideum OX=44689 GN=racA PE=1 SV=2
Q9XGU0	Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana OX=3702 GN=ARAC9 PE=1 SV=1
Q38912	Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana OX=3702 GN=ARAC3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009531 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24413 all species →	SPECKLE-TYPE POZ PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030162 all species →	Biological Process	regulation of proteolysis	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07868	RHOBTB1_2; Rho-related BTB domain-containing protein 1/2	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.