Gene detail

Detailed information of gfas1.m1.7996.m1 in Galaxea fascicularis

Genomic Location: Sc0000612:29786...41882
NR annotation: XP_020602789.1, mevalonate kinase-like isoform X1 [Orbicella faveolata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.7996.m1

ATGGCACCCGAACTGCGCCCGAAAAGCTTCGAGAGTTTCGACAAAAGCTCTCAAGACACTGGGCACTGGTTTGCTGATTTTGAGACTGCTGTTCTGGTCAGCCCTCGTTCTTCTTCGCCTAAAATTGAAGAGAGGATGGTGTTTCGTTGTATTACGGTCACTGCACCGGGAAAGATCATCCTTCACGGAGAACATGCAGTCGTTTACGGGAAGAAAGCTGTTGCAACTGCTATTGGTTTAAGGACTGTGGTGAAACTGGAATCACAAACTGATGACCATGTCACACTAAAGCTGCTGAACTTCAACACATGTTGCAAATGGAAGCCAGATGAGCTGCACAACGATGTCACAAGGCTTCTTGAAGCAGATTTGACTTTTTGTACCCAAGAAGGGAGTGAGTTATTTAGCAAGTTTGTGGACCATTGTGGCATTACAGACATTGAAAAGAAGTTCATCAAAGATGCAGTAACTGTTTTCTTGTTCCTGTTGGGAAGAATTGTGGAAGATCTAAGCAGGCTTCCATCTTTCTCCATTGAAGTTAACACAACAATCCCAATTGGAGCAGGTCTTGGATCATCAGCTTCATACTCGGTCTGCTTGTCCACAGCACTTCTAGCAGCCTCAGGGAAGATTCCCTTGCCACAGTCATCAAGTGATGTCCTAACCAACTGCTCTGGGGTCACTGATACTCCTCTGAGTGGTGCTAATCAAGGGGATGTTTCTCTGTCTAACCAAGACCTGGCATTGATTTGCAAATGGAGCTTAGACGCTGAAAAGCTTGTTCATGGGAAGCCATCTGGTATAGACAACTCTGTTTGCACATATGGAGGAGTTCTCACATTCCAAGATGGCATCATCAACCATTTGAAAAGTATTCCTCAACTGAAGATCATTGTAACCCATACCAAAGTTCCTCGAAGTACCAAGGACTTGGTGTCTGGTCTCAGAGAAAGATATCAACAGCTTCCATCCATTTATGAACTTCTATTTGATGCCATTGGAGCTATTGCAGAGGAGAGCTGTGTTTACCTGGAGAAACTCTATCAGATTCAAGCTGAAGCAAAAGACCTCGCCACAGACTCTCAGAAGCACTACTGTGTGTTGGAGAAACTTATTGACCTAAACCAACAATTGCTTGTAACGTTAGGCGTTAGTCACAGCTCATTGGACCAAATATGACACAAGACAGCCAAATATGGTATGCATTCAAAGCTGACAGGTGCAGGTGGAGGAGGATGTGCCTTTACACTTGTCACGCCAGGTACTGGAGAAAAATCAGCGAGTGACGTCTTTCATGAACTGACCAATCAGGGATTTGAAGTTTGGGACACGTGTCTAGCTGATAAAGGGGTGACACTGGAGATTATCTGACCTTACCCTTAACAAAAAATGTCAGTGTTCAAGAAGTAGCCTCAACTCAACTGAATTGTGTTTGCTGTCTTTCGTAGCATCTCGGTTCTCCGGTTCACTTGAATCTTTTCAGGGCAGTGTTCTCTGCAACATACCTTTTAACCCAAAGATGAACGAGTGACGATTCCTCGGTAATACATACAACGAGTGTCTTCAATGTTATATCCCGCGGGGTCGCAGTTCATCGTCCCGCCCGAAGCCAGCCCCAGACCGCTTCCCATTCAACATTCAAATCCTGGCACAATTCCTTGAGAGTAGCCACGGTTGCAAACAAACACACCAACTTCAACAGCTTTACAATGGCCTCATTTTTTGCTCCAGTATTCTGATATCTTCTCTTCACATGTGGGAACATGTTGTTGCTGTACGTGTCTTCTATCACTTGTTTGGCTCCTGGCCATGCCCCAGGTCCCATGAGGCGGTACTGAGCTGCGCAACAGGGCCCAAAATAGCACTTGAGGGCTAAGAGAGGATCCCTGAAAAAGAGCCTGCTGAGGTTTGGTTTGCAACCAATCAGATCTGCAATCTGGTCTTTGTACGGAATGCTTGATACCTTTGGAGGAAACAGGAAAACACATTTCATTGATGGGTCTTCTGCATGGAAAAGAATGGGAATCCTAATAATTAGCAACTTAGGCTAGGAAGGAGTTTTGAGTATGTGATTACAAGCGTGTGACTTTTCACTAAAATGATCTAAACCATAGAGCTGACAAATAACATTGAGAAGTCAGTGGCAGTTTAATAGACGTCAGCGATTTGTATCCCGTGAGTGATGTACATGAAAAGAATCATTTGATTTGTATTCTGTCGGCCTAATGAGTGCTTCTTGTGGAGAGCTTAACGAATACACACGAGATCCTGAATATGTCTGTTAGTGAATCTAGTGGAATGTGGAAAAAACAAAATCTTACTGTTTGCGGTAGTTAGGTATAGTTGACAAACTTTACTCACACTGGTTACCGAAAGAAAGAATAGTTAAAAGCGTCCAAATTGGTGTCCTAATTAGTTTGTAAATCATGAGACAGCTTGAATTTCGCAAATTAGTCGTCAACTGGGATATAGCAAAATAAAGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03426	Mevalonate kinase OS=Homo sapiens OX=9606 GN=MVK PE=1 SV=1
Q5E9T8	Mevalonate kinase OS=Bos taurus OX=9913 GN=MVK PE=2 SV=1
Q9R008	Mevalonate kinase OS=Mus musculus OX=10090 GN=Mvk PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004686 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00288 all species →	GHMP_kinases_N	GHMP kinases N terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036554 all species →	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan
IPR006204 all species →	Domain	GHMP kinase N-terminal domain	Interproscan
IPR006205 all species →	Family	Mevalonate kinase	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR006203 all species →	Conserved_site	GHMP kinase, ATP-binding, conserved site	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43290 all species →	MEVALONATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004496 all species →	Molecular Function	mevalonate kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006695 all species →	Biological Process	cholesterol biosynthetic process	Interproscan
GO:0008299 all species →	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0019287 all species →	Biological Process	isopentenyl diphosphate biosynthetic process, mevalonate pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.7996.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.