Gene detail

Detailed information of gfas1.m1.8497.m1 in Galaxea fascicularis

Genomic Location: Sc0000692:28275...54402
NR annotation: KAJ7387815.1, Chromatin assembly complex, subunit 3 [Desmophyllum pertusum]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.8497.m1

CAAGAGCATAGGTGCCAGTTCCAAATGGCGCCAAATTACCACCCATCACGAACCAATCCGAATATAATATCCACGTGTCGGTATTCGTTGGCCTATCTCTTGTTTAGTTGTAGTTGTAGGAAAAATGGAGGCGGATAGCCCACAGCCCGCGGGAGCCTCCAAAGTCGACCTCCAGAACGATCCGGGGAAGATGTTCGTCGGAGGCTTGAGTTGGGAAACCACCGCAGAGGGACTGCAGGCGTACTTTAGCAAGTATGGAGACCTAAAGGAGTGCTTGGTTATGAGGGATCCGAACACAAAACAATCAAGGGGGTTTGGGTTTGTAACTTTTGTGGATCCATCCGCTGTAGAATCCGTGTTAAAAGCAGGCCCGCACGATCTCGATCACAAAAAGATAGATCCTAAAGTAGCAGTACCCAAAAGACCTCAGCCGAAGGTAAGGACTTAGCAAAACTTAAGTACGTTAAATTTAGCGTGCAAGGGTGTTTAAATATCGTGTGATGTACATCTCGATCAAAAGATCAGGGTTTTGAAAAATGTTTGCTTGACAACAGCGTTGTACCGGCTTTCGATTTGAGCGAGCGTACTTTTTTCAAAGATAGCTTTCAAGCACCGAGACTTCTAGGAAAACAGACTCAAGTTTCACGCTGTTAAGCCCAGCATTTTGGGCACAATTTGCAAAGCGTTAGCCATTTCACCGCCGCCTCGAACTACATTTCCATTCGGAAGCCAGCTTGCGCGAGCGAGCACAGAATTATCTCACGGAATATACAGTCGGCGCCGTACAATGGTTTCAGGACCTCAACTATGAGTTTAATACTCGATTTGGATAAGTAAGAACGGCTTAGAAAGTACACTGCAAGAGTAACTGCTGCTTCAAAGATGCTTGTCTCCTGTCTCCTCAGTACGCCCACTTGAAACAAAATTGAGGGAGCGAGTGCGGACAAGGTAAGCGAGACTCCATCACCTCCTACGGGGAAAGCGCTTAAGAGGCGAACGAAATACACGCGATATTCTGGGGGTTTTCCCGATAGAACCATTCGCCGCAACATCTTCTAGCGAATTGACGATTGTTCCTTCTCTCGCTTGTTTTTTCCAAAATTGAATAATTGCAGGTTCTCGAGGTCGATTTAAATAACCCCATCAAAAAATGCTAACGGAAGCTGTGAGCCTATTCGTGCATGGAGTTCTCCAGTTTTGCTAAACGAAGCAATTACAAACGATAGTGTTTTTATAGAGTATTTTAGTATGTCCACTGTAGAGGACCAGTCTGGCAATTTATGTTAAACAAACACGATTTTGCACGGCCGTGTCTTGTTTCAGTTCCGTGGAGTGCCTTCCTTGCACGGGGTCTTAGCTGGTGTGTTTGTTTCGTGTGTTTCGAGGCCATCAAAATAAACGAGACTTACGATGGTTACAAGAACAAAGAAGATATTTGTTGGTGGTGTATCTGCTTCAACTACAGAAGAGGATTTAACTAACCACTTTAAAGAGTTTGGCAGTGGGTCTCGGAAGAAGTCTCATGGAGAAGAATCAAGACTGGGGAGTCAAATAAATAAATTACTCCTTCAATAGCAAAAAAAAAATCAAGAAATTTTCTCAGAGTCTGATTGGTTTCAATTGGTCATGTGACATGATAGCATTTACCTGAAGACACTAATAAGATGATAAGGTTCATCCAGCAGAAATGCCCATAGTACTCATCAGTGAATGAAGCTCATGCTTATCATTCTTGTTCATTAAAGTCTTGTTCACACTTGAGAAATAATCACAATCGTAATCATGAGAGAGTTACGAGGAAATGTGAGTCAATACCACATAACTGCTGTAATAATAAATTTTTATTGTAACCATAAGAAAAAGGAAACTTTCTGATCCTTATGATTGTGATTGTGGCGCTTACAATGTTGCTTACGTCTATCACATTCATTTTTTATTCACACTGGGTTTGAATACTCCTTACCACTACAATTGCAATGCCAGTGTGAACCAGGTGTATGCAACTAGTTCCTGGGGATTCATATGACAATGGCGTCACAGCCTGGTGTTGGTGGACAATAATTGCAGCACGACCAGTACACCAACAGGGCAGTGATGTTGTATGCATACCATCCTGATGTTGTATGCATACCATCCTTTAGTACAGTTAAACCCCTATTAAGTGGCCACCTTCACCGAAAATGGAAAGTAGCCGCTTAATGGGAGCTGGCCACTTAACAGAGGTAAACAACAGTAGAAGAACCATCATCAGGACTTCGACTACTGGCTGCCTAATAGGGGGTGGCCGTTTAACAGGGGGCCACTTAATAGGGGTTTGAACCATCAGCCAACAGTCTCACTACCACTCTATTTAATCACATTAGTACCTTTCTGCAGCCAATCAAAACATGAATTTTCCTGATAACTCGTAGAAGAAATAATCAGTACAAGTATGAGACTTGTGGATGTATATATTCCACCCAGTAAATATTATTGAGGTGAATAAAATTAAACTGAATTGACCACATAAATGCCTGAAGATCAAAATATAACCTTGCATCTGTCTTCACTTCAGGTAACTGAATCCAAGCTGATGTTTGACAAAGTTACTAACAGACACAGAGGTTTTGGGTTTGTAACTTTTCAAAATGAAGATGATGCTGATAGTGCCTGTGAAGAACAGTTTCATATTATAAATGATAAAAAGACAGAAGTGAAAAAGGCACAACCAAGAGAAGTGATGCAAAGTTTGCAGGGAGGGCGTGGCAGGGCTGGAAGAGCTATGGCTGGTCGAGGATTCTTGTACCCTTTTACTCCTGGTTTTCCTCGTGGTTTTCCTCCATCTGGTTTTGGCCCTGGGTTTAGCAGCTACCCATTTGCAGCAGGGTATGGTCCAGCAGCTGCTGCTGCAGCTGCTGCATTTGCAGCACAAAACAGGCCAGTGAGAGGCAAAGGTCGAGGATTTTTGGGAAATTACCCTGGAATGCTTGGGTTTCCTGGTTATCATACTGGTTACATGAATCCTCCAGACCAGAGAAGGACACCTGGAGCTGGCCAGTACTATGCTGAATATGCAACCATTAATAGTCAGGGAGGGCGATCAGGACCCAACAGACCACCTGATATACCACAAGTTACACCCACAATGCAGGAATATACTGATTACCCTGGAGGAATAAATTACCCTCCCAATCAGTTTGGACCACCCCCACCCTCACCAGTGTCAAGATTTGCCACAGCTGCAACAAGCCCAGGACCTGTCCAGGATCTGAGCAGTTACATCAACTCCGTAGCTAATACTTCAGCAGATGGTCTCGGTTACACAGCAACCAGCCCACAGCCAACAGGCTTTGGACATGCCATGGCGTTCTGACGGAGGAGCGCATCATTATTACCGTTGGTCACTAAGAAGCAGTGACATCTGCGGTGGCAAATTTGATCTGACGTCGCCGCTCTTTTAAACATGGAATGTTCTTACGAGTTTGTTGGAAGTCGGCAATTCAACATTCTAGTTTGATGGTACCATCTTTAAGGTTGGATTATGACACCTTAAATCAGCATCATAACTCGAACTAATTCACCATCCGATTTTAAAACGTCCTGATAAACATTTTGTAGTCAAATAATAGTTTTAAAGTAGTTTACAATTTATTGCGAGTGTGTGTAAGGGTGATTTTTCGACTAACTTAACCATGAACTTTAGCAAGGCCAAAACGTTTTTCTTTCATTATCTGGTAGTCAAGGGTAAAATTTGTTGATCATGATGGGGTAAGATGTGAGAGATGACTTTGTTGTTTGACTGTTACACAGTCAATTTTATTGTAAACGTTAATTTCATGTGTAATAAGATAAATTTGTAAACCCGACTCCAAGTCACAGAGTCTAGAGCACAATCGACTCAGGCATCATACTATTTGATACTTGAACCAAAAACACCCAATAAGCACGTGATTAGCAGATGACTGGCACGTGATTTTCACTTGTTATTCAGCATTTTGTGATAAGATATTTGCTTATTTGGCACTGGCACGTTGGTAGCTATAACTGATACAAGTCATACAACTGTGACTAAACTGCTCATGAGAACTACTGAACTCAGTATAATGGAAATGAGACAAAAGGAGAGGCGAAGAACTTTACTTCGGTCAGGTAGTAGTTTCAATTTCGTGAAGAGAAAAAAGTAAATGAAGCTCTTACTTCTTTTCTTAGTAAAAATTTACAACTTGAAACTTCCCTTCTCTCGAATAAATAAGTATGACCGCACGAACGTTCAATTAGTAACAATAGTAGAAATGATGGAACGATGAGTTGTCAGTGCCCGCTTAAATTTCTGCGATTGGCGCAATTGAGATCATGATGGTTCTGCACGTAGAAAGGTAAGAAGTATTAAGGTATATTTGGGTATCAAGTTAAACTACAACATAGGACTAGAACACAGGGTTAGCAAATTCTCTCACCCCCTCCCCCAGTGTATTCGTTATTCTGCGTTTCAAATTGGCATCAAATGCCGTTTTTTCGTTTTCTTTTTGTTCGACCTGAATTTTTGTGCAAATTTTTTTTTGTTGGTCAGTTTCAAAAACTGATTTTCTTGAGGCGTAGGTAAAGGCAAACGAAGCACCGTTTTGAATTTAGAACCAGCAGATGAATCGTCGTTGATTTAGTTGATTTCAGCTAAGAAGTGTTGCAAGAACTAAATGATTTTACTTATACTGATGATACAGTGTGCTTCTTAATCAATTGTTTCTTTCATAAAAACGTTCCTTGCAGCGGTCCTTTGCCTTTGTTTGCCCCTTGTCACTTTGAGAAAACTTAGACGTTAGCAGATCCGCTGATATCTTGAGGGAATTATTTCACTTAGCTTCAATTAGCCGCCGCTTCTTAACCGGCGGATATAAACAATTCCAGTGATAGTGTTTTAGTTAACGACGACGAACGAGTGAAGTTATTTAAGTTTTCTCAAAAGAAAAAATAATAATTCTAAAAGATTTTATTCGTGAGCATGCGCCGCACACAGCCAAGAATGTTAAGCGTAGTAGTTTGAAGTCTCACCACTCTAATAACCTATAAAATATCCGCTGATGTAGATATTTAAAAGTGGTGAATCCGCCAAGTTAGATGATGTACCAACGTCAAGTCCTGACCATTTTTATTCCCATACATACAGTTTTATTGTATTTGTCAAGGGGGAATTTAAATAAAATCAATGCATCCCTTTGTTTTGACTCGCAGTTCCCGCAAATTTTTAGTGACAGAGGCGTTGTCATTGACCATTGGGCATTTGCTGTTTGTCTTTGAATTCTCTTTACGCTTGAATCTTTTTGAAAAATGGTCAGGGCTTGACTGGCGTAGAAGGAGCCAACCTTCAATGTCCTGGCTGTAAAAAAGGAAAAATTCATTCATCATTCTAAAATGAAATTTGAATGCGTACTCACAGAGAAATCGAGTACCTTATATTTATTCTGTTTTCTTGATATTATCCCTTAAAGTATATTCACATTGGTTATTAGGTAACCACTTTCTGTGTCACTCCAGAACCATTTGGATTACTTGGCTGTTCAAGATTTCTCTTATTCAGCATGTTCAATGCATTGCCAAAATTTATAAACAATCAGCCGCACAGTCCAATAAGGTTTTTTGCGTATTTGTAGCTCGAATGGTTTTGAGAGTGATAGAGTTCCTTGTTTGGTTTTCATTTTTATTGCTAACTTTTACAGCAAATGAAGATAACCAAGAAGGAAACTCGGCAAATTAGTAAACAAAATCAACTTGCCTTCAAATTTGTGCATTTTTTTCTTTATTTCAACTTTATTTTAATATAGCGAATAGAAGCTGAAAAAGAAATTTACTTCAACTTTCAAGGGGGTGTACTTTTTTTTCATAAAGGGAATGCGCTGTGGCACCCTTAACCTTATGCAAGGTTCATAGCTTTTGCTGTCTGCCATAGTTGAACCGGTCCTTGCTGCGAGAAATCATGAACCTTAGACCCAATGTTATTTTGAAATGCTTAGAAGGTTTTTACATTTGATATATTAAGCTTGCAGAACTAGTAGTTACGTCCCTCAATTCTGAAAATGGCCTGGCTTATTTGACTTAGTCTTTTAATCGCTAAAACGTTTTGTCGTAGCAAAATAATCTTAGATAAAAATTTTGTGCAAACAGGACTCGTGCTACAGCCCTAAGAATCCCCGCTGAATTTTGTTGACTAGTTAGATTACAACCAGCATTGCTTGTCAGACTAAGAGAACCGAGATTTTTAAACGTAATACCATTCTTATGCGTAATTTTATACAAGATTTGTCTTCAGCCAAATGTTTGTACTTGAGGTTTTCCGTGTAAAGCAGCCAACTAAGGCTGAGAAACAAAAAAATCATTTTGAGACTTTTTTTTTTCATTTTCTAGATGTGCTGGAGGATCTTAAATTGCCTTTTAAGTATCACGTGTATCTTTTTTTTCTGTTGACCGCTTTACATGGGAAAACAAGTTTGTGATAAGAGATTATTGAATGTATTTTATTCAAAAAAGGAGAGTAAGTATATATTTTCAAAGATTTCTTAAAATCGTTTAAAGCTTTCAGAGAAATCTTGTTACAGAGCGTGATAATTTGTATCGCGACCTTAAATTCTAGTGGTGGGTGTAGTGCTTAGCTTAGCTTTGACGCCTTCATATTAGCTAACTCGGCATCAGAGAACACGCTCTTTTGTACAGGCAACATATAGTACATTGAAAAGATCAGTGACGCTAATAGCCAACCAACTGAATCTTGATTAAATTTTCACCAAATTAAAAATTTCTCGGGCTACAAGAAAGAAACCATTACGTTAAACTCGCCCACCTATTAAAGTTTGTCTCTGAAATCTGGAGTTTTTGACCAATGAGGTAAATTGGTAGTAGCGTCACTGACTTATCATGGCGTTGATACTACTTTTACAAAATCAATTGTCAACAGCTTTCAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96DH6	RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1
O43347	RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1
Q61474	RNA-binding protein Musashi homolog 1 OS=Mus musculus OX=10090 GN=Msi1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000504 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032 all species →	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005844 all species →	Cellular Component	obsolete polysome	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.8497.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.