Gene detail

Detailed information of gfas1.m1.8943.m1 in Galaxea fascicularis

Genomic Location: Sc0000776:29361...45757
NR annotation: XP_020632886.1, acid sphingomyelinase-like phosphodiesterase 3b [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gfas1.m1.8943.m1

GTTGGTCAAAGGGAATGGAGACTGGGTAAGAGACAGAAGAGCTTTGCGTGACATTAGCACACTGGTGTGCATCAGCTTCCGTGAAAAACAGGAAGCCAGAGGCATTTCAGATGACTCATAACGTTCGGTGGCCATGATTACACGCGGCTGTTCTCAATTTATATTTAAGCTTTTTATCTGCATCCTTAGATCTGTTTGTTGAAGCGGGAGCTAATTTTTGGGCGAGAAATCATGAAATCAAAGACCGCGTTGGCTGTTGTTGTACTCCTCATGCATTTCAAACCTGTATTTCTCACAAAAGTCACAGAAGGAAGTTTTTGGCAGGTCACAGACTTCCACTACGACAAAACCTACCAGGTAGCCACGGATCCGAACAAGATATGTAATTCCCAGACTCCTTTCAGTCAAAAGCCCAGTGAGTCAGGGAGCTGGGGCGACTACTTGTGCGATTCACCGTGGAAGCTTATCAACTCTTCCGTGTTTGCCATGAGGAGTATTGAGCCCAATCCAGACTTCATTATTTGGACCGGAGATGACATGCCTCACGTGGCTAACAGTGAACTGAGCACAGAAGAGGTTATAGAAACCGTCAAGAACCTAACCGAACTGCTGGCTACGGTCTTTCCGAACAAAACGATTTATCCCGCTCTTGGTAACCATGACTATCACCCCAAACACCTAATGCCACCTGAGCCTAATGACATTTACACAGCTGTAGGCGATTTATGGAGTCGGTGGCTTCCACAGGACGCACCTGGCCTTCGCCTCATCAGTCTGAATACTGTCTATTACTACACCAACGACAAACTAACAGCTGACTTGCCAGATCCCGCGGATCAGTTCATTTGGTTAGATCAAGTGCTGACGAACGCTTCCGTTGGTAAAGAAAAGGTCTTCATCATAGGTCACGTGCCCCCAGGAGCCTTCGAAAGAGCTCCTGGAAAGAAGTGGTTTTACCCACAATTCAACAAGAAATACATCAATGCCATCCTCAAACATGCAGATGTCATTACTGGTCATTTTCTGGCCCACCAACATTGCGACAGCTTCAAAATCTTCTACGACGAAAAAGGGATTCCCCGCAGTTCGCTGTTCTTGTGTCCAGCGGTAACTCCATGGAAGACAGTACTGCCAACTGTAGGATACAACAATCCTGGCATTCGTCTGTACAAATACGACAGAAGCACTGCGCAAGTCAAGGATGTTTGGCAGTACTTTACAAATCTGACGGAGGCCAACCTGATGAATAAACCTGATTGGCTAATAGAATATAAAGCCACTGAAGCGTTCAACATACCAGATGTGAGCCCGCAGTCCCTTCACGCGTTGGTGCAGACATTTGAAGATCGAGAAAGCTCCAACTTTAGAAAGTACTATTTTTACAACTCAGTTAGCGCCGGAGGAGAAAACTGCGAAGCAGACTGCAAAACTGCACAAATATGCGGCATCACTAAAATTGATTTTGACGAGTACGATGATTGTCTTACTATAACTGCTAAATCTTTCACAACTGCTTTAAGAAGGGTCAGTCCTGTAGCAGCTGTTTTTTGTCTGGTTTTCTTCTTGTCTTTCTTCACAGAGGAGTTATTTTAATCATCGCAATCATCGCTGTATTGTGACTTCATTGGTGCAATTCTATAACTTTTACGGAGCTGTTAAACAAACCTGTCTTTGTATAGCCTTGTTTCCAAACGATCAAAAACGATCGCAAAGAGAACTATTTTATATAACAGCTAAGGATCACAAACGGTCGCAGAGCCAAGTTTTCTATACGTTTCGGTAACAATGCGCGGGTTCAGTTAATCGAGGTCGTAAAATCCACGGTAACAGTATAGAACATCGCTCTGATCCATGAGGTAGCATTAATTACGATGGCAGGATGGCAAACGATCGTAGAAGTGAGTTTCCCATGCTATGACCGCAGACGATCGTAGAACAAGAATAATGAGGAAACCAGGCTTAATTGTGTATTCTTTTTTGTTTATTGTTAGCGTTAGTAGATAAATGCACTTGTTAGTTGAAGGCAAAGAATA

Protein

Uniprot

Uniprot term	Description
Q92485	Acid sphingomyelinase-like phosphodiesterase 3b OS=Homo sapiens OX=9606 GN=SMPDL3B PE=1 SV=2
P58242	Acid sphingomyelinase-like phosphodiesterase 3b OS=Mus musculus OX=10090 GN=Smpdl3b PE=1 SV=1
Q54SR8	Sphingomyelinase phosphodiesterase C OS=Dictyostelium discoideum OX=44689 GN=sgmC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF19272	ASMase_C	Acid sphingomyelin phosphodiesterase C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR004843	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR041805	Domain	Acid sphingomyelinase/endopolyphosphatase, metallophosphatase domain	Interproscan
IPR017064	Family	Acid sphingomyelinase-like phosphodiesterase, predicted	Interproscan
IPR045473	Domain	Sphingomyelin phosphodiesterase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10340	SPHINGOMYELIN PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0004767	Molecular Function	sphingomyelin phosphodiesterase activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006685	Biological Process	sphingomyelin catabolic process	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01128	SMPDL3; sphingomyelin phosphodiesterase acid-like 3	EC:3.1.4.-	Enzymes with EC numbers	-	deepkoala