Gene detail

Detailed information of gfas1.m1.9260.m1 in Galaxea fascicularis

Genomic Location: Sc0000841:22678...25660
NR annotation: CAH3170984.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

gfas1.m1.9260.m1

ATGTCCAAGGCAACTCGGCTGCGGCCACAGGTGTTCGTCTGTGTGTGGCCGACTTTGTCACGAGGTGAATGTGACCGGGGTCATTCGTGTCAAAGACGCTGTCATTTTGGTTCAATCTGTGGCAATTGCATGGCAGAGGTTAATATGGTAATTCCTAGATGTGGACACAGCATCAAGGTGCCCTGTTACATTGATCCAGCGACACAGAAGTGCAAACAGCCATGTCAGAGACAGAGAGTCTGCGGACATCCCTGTGGGGAAATTTGCAGTAAGAACTGCGAGTCTAAGCCGTGCAAAGTGCATGTAACCACAACATTACCATGTAATCATGTGGTCTCCCTTGAGTGTCATAGAAATCCTCAGAAGTTCATTTGCAAAAAGGAAGTTGAAGTCAGTCTACCATGTGGACATAAAACGACCTTAAAATGTCATGTTGCAAAGGCTGGATTAGAAAGCGTCTTATGCAATACACCAGAAATACAGTGTTCGGATAACCCTGAAAAAGTTTACTGTGATGCTCCCTGTCAACGCTTTCTTCCATGCGGACACCCGTGCCCCAAAAAATGCGGCGACAACTGTGATGACTTCAAATGTATTGTTCGAATAGAAAAGGAATTGAGTTGTGGATACCACAAAATCAGTTGCCTTTGTTCAGAAGACGTGTCCCAGGTTATTTGTTCAAATCGATGCAAGCGATATTTGACATGTGGTCACCAATGCCCTGGAAAATGCTATGAAGACTGCAGACAGCATAAATGCCTGAGGATAGTGGTGAAGAATCTTCAGTGTGAAGGAAACCACTCTCTCAAAATGCCTTGCAGTACCGATCCCCTCACGGTGGCATGCCAAGCACCCTGCAACAGGAAGCTAGAGTGTGGTCATCCCTGTACGGGGCTTTGCAATCAACTTTGTAAGAGTATAACTTGCAGACGTGGTGTAGAGAAAAAGTACCCCTGTGGTCACAAGGAACAACTTCAGTGTTTTCAGAGCAAAACCGCTACCTGCAAGGCACCTTGCCGGCGTCGAGAGAGGTGCAAACATATGTGTAAGGGTATCTGTGGGGAACCTTGCTCTAACTATCCTTGCGATGTACTTTTGGGTAGAACCCTGTCTTGTGGTCACAAGGTTCAGATGCCTTGCAGCTCTTCCGTGGATGACGTACAATGTCCTGCTCCTTGTGGAGCTACGTTGCCTTGTGGTCATACGTGTTCAGGAACATGCAATGACTGCAAACAAAGGGGTTCACATGAAATGTGCCAACAACCATGTAGTCGCATACTCGTCTGTTTGCATCGTTGCAAAGCTATATGCAGTGAGCCCTGCCCACCCTGTGACAGAAAATGTAGTCGACTTTGTCCTCACACAAAATGTACCGAAAAATGTTCACAGCTGTGCGCACCGTGCACAAAGTCGTGTACGTGGAGCTGCCCTCATTACCAATGTAATAACCTATGTGGCGAGGCGTGTGAACGCCCTCCATGTAATGCCCCCTGTCCGAAGAAGCTCGCTTGCCGCCACCCTTGTATTGGTTTGTGTGGAGAAAATTGCCCGACACTGTGCTCAATATGTCATGCCAAGAAGTTATCTTCCATCCTTGCCGAAAGAGGTCGAAATGCGTCTAAAGCCACAAGGTACCTGCAGCTTTTTGACTGTGGCCATATCCTGGCAGTTGAGGAAATGGATGCGTGGATGATTCGCAAAGTGAATAGTAATGCTCAGCTCATTCGATGTCCTAGATGTTCCACAGCCATTACCTTCAGTTATCGTTACGAAAAACTTGTTAAGGTGACATTAAGTAACGTTGACAGCGTAAAGAAACAAGTAGAAGAGATCGCAAAGGAATCTTTCAAATTGGCCAGCAACCTATTGCGGAATTCACATCGTCTGTGTATCGACTTAAGACTGATGAAGTTTCCACGAAGCTTCAGTTCGATTGCAAGGATTCCCTATATAACGGCTTTGGACAGCGTGGAGGCACGCAACATTCCTCTGGTATCAACTCTAAAAAACCATCTTATCGTTTTGCGCCAGGTTGAAAAAGCGGAAGGAAATTTACCGACCGTCGAAAAGCATCAAGAAAATTCTGAAGACCAACGGGAGTTAAAACAGCAATCTGACACTATCATAGAAGCTTTAGAGAAGATCAGAGATTACCTCATGAAGCCTCAGCTAGACCTGAGAACTCTACATCAAGTGCACGAGGACACGAGGAAGCTAGCCCTTTTGGCTTCAGTTCTGGAAGCCCAAAGTGAAGCCATCAATCAGCAAACGCCATTCTCTAGTATATCCCAAACAGATTTAAAATTGGCTCGCAAAGGATTTAAGATGTTTCTTGAAGGGAACAACGACGCGCTAAAAGTCAGCTGGTTGGAAGAAACTGCCGATTCCTTGAGGAAAGAGGTTGGTCTCCCACCGCTTTCAAAGGAAGAACCTAAAGAGTTCGAGAACTTTCCAGCCTTAAGCAAAGATGAGTGGAAAATATGCGAACACCGACAAGTCTACTCCACAAGAAGGATAGTGCGCGATGGAGAGGACATTACTATCAGAAAAAGCAGCTGTACCGAGTGTAACGAAGGACAGTCTGAATGA

Transcript

gfas1.m1.9260.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR034078	Family	Transcription factor NFX1 family	Interproscan
IPR000967	Domain	Zinc finger, NF-X1-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12360	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12236	NFX1; transcriptional repressor NF-X1	-	Ubiquitin system	ko04121	deepkoala