Gene detail

Detailed information of jg11603.t1 in Edwardsia elegans

Genomic Location: ctg_0736:120024...143168
NR annotation: EDO42662.1, predicted protein [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

jg11603.t1

atggcggacggtaagcagcaaactacagcggctacaaacggcgatgATAAGGAATATGGATTGGAATGTTGTGCTGAACATGGAAAATGCAATGGAGGCAACAGTGGGGATGACGATAATTCACATGTAAAAGTTAAACAAGAACCACCTGATGAAGAACAATTCGACTTCCCGGCAATAATACAAGATGTGTCAAGGAGTTTCAAGGACCAAAGTAATATCATAACCACCAAGCAAACACATTCAGAAtcgaagccatatgaatgcaaacagtgcggtaaatttTTCAGTTGGCCTAGTGCTCTTAAAGCACATGAACgaattcattcaggattgaaaccgtTTGAGTGTTTACAGTGTGGAAAACATTTCAGTAAGTCTTGTAATCTAAAGGCACATGAAGGAATTCATTCAGaagtgaagccatatgaatgcaaacagtgcggtaaaCGTTTCAATTACGGCAGTAATCTAAAAGCACATGAAGAAATTCATTTGAGAtcaaagccatataaatgtaaaCAGTGCGGCAAATGTTTCACTCAGTCTGGTTACCTTACAAAACACGAAacaacacattcaggattgaaaccatatgaatgtcaacagtgtggtaaatgtttcagtcagtctggTCACCTTGCATCCCATAAacgtactcattcaggattgaagccatatgaatgcaaacaatgcggcaaatgtttcagtcagtctggTTACCTTACAAAACACGAAacaacacattcaggattgaaaccatatgaatgtaaacagtgcggtaaatttTTCAGTCGGTATGGTAACCTTACAcgacatgaacgaacacattcaggattgaagccatataaatgcaaACAATGTGCCAAATGCTTCAGCCTGTCTAGTTATTTAGAAGTACATGAACGAATTCATTCAGAAGTgaggccatatgaatgcaaacgcTGCGGTAAATGCTTCATTCAGTTTTGTCATCTGAAagcacatgaacgaacacattcaggattgaaaccatatgaatgtaatCAGTGCGGTAAACGATTCAATTACAGTTGTAatctaaaatcacatgaacgtactcattcaggattgaaaccgtTTGAATGTTTACAGTGTGGAAAACATTTCAGCAAGTCTTGTAATCTAAAGAAAcatgaacgaatacattcaggagggaaaccatatgaatgtaatcattgtgCTTTACTCGGCTCTAAACAACGTCCCGCTCTGTCGTGCAAGCACATACGGAATAATACAGATGAATCCCGCGGGACTAACAAGTATTGGATCAATGTGGCGGGATCCCAGAAGCCATTGCAAGTTCACTGTGTCTTGGATGGCGGTCCAGCGGCCGATTGCCAAGCAATACATCAAAGACATCCCTCTTCACCCAGTGGACTGTACTATTTGGACCCAGATGGCGGTAACCATGACAACGAATATCTAGCTTATTGTGACATGACGTCACATGGAGGAGGGTGGACCATGTGTTATTCAAGTAACGACAAAGTCAAGCCTAAAACGGAAGTGACGTATGATCCCCAACACCCGTATGGAACTAACGGGTACAGGACAAACTGCAATGATATCACGttcaaCGAGGTTATGTTCATCAGCGAAGACAGCCCAGGGAAAGATTCATCATACTTTAGACGACAAGGCGGTCAAGTCATCAAGGCTGCAGAATCCTACAACAATGCAAACGCAGCCCCAAGTGGATTATGGGATGGCCATGGCGTAGCCTCGACCTCGTACCAGTACCAACTCTTAATATGTGATGATAATTTTTATAACGGATTCTTCATGAGTGGGTTTACTGAGAACTGTTATAAATTGTGTGACTGGTGGTGTGGTGACCTGACTTCAGACTACTACCGCACGGCTGCCGCACTGAATCCTCGGTACGCTGGTGTCGCGTTTAAAGAGATGGGAGCAGATCCTGCGGTTGTGTCAAGCAAGCTGATGAGCGCTGGAATAAGGAGAAAGAATTGA

Transcript

jg11603.t1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR050636	Family	C2H2-type zinc finger domain-containing protein	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47772	ZINC FINGER PROTEIN 200	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala