Gene detail

Detailed information of jg21038.t1 in Edwardsia elegans

Genomic Location: ctg_0212:225725...244877
NR annotation: XP_048578344.1, acetyl-CoA carboxylase-like isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

jg21038.t1

ATGGTCATTCGATTTGTGGCGCGACATAACACACGGAGAGAACATGCAATCAGACATGATTGTGAAATCTATGCATTAGAAACTCGCAAATGCATTGAAAACAGCTGTGAATTCACCTCAAATCTCTCACAGGTGCGATGTCTGGATTTCGATAATgttGTTACTCCTGCAGAGTTTGTCAGAAAGTATGGTGGCACAAGAGTAATTGAAAAGGTTCTTATAGCCAATAATGGCATTGCTGCTGTCAAGTGCATGCGATCAATTCGCCGTTGGGCATATGAACTCATCGGCAATGAGAAGGCAATCAGGTTTATCACCATGGTTACCCCAGAAGATTTACGAGCGAATGCTGAGTATATCAAGATGGCTGACCATTATGTCCTTGTACCAGGAGGCACCAATAACCATAACTACGCCAATGTCGACCTTATCCTTGATGTTGCTAAGCGAATACCAGTTCAGGCTGTCTGGGCAGGATGGGGACATGCGTCTGAGAATCCTAAATTGCCTGATTTACTTGCTAAGAACAACATTACATTTATTGGTCCTCCTGCTGAGGCCATGTGGGCACTAGGCGACAAAATTGCATCAACAATAGTAGCACAGACTGTTGGTATCCCCACCCTCCCCTGGAGTGGAAGTGgTTTAATTATAGACGATCCGTCTGGGAGCTTGGAAAGTGGTGGTGTTGCTACCGTCTCTCAAGAGTTGTACGCGAAAGGTTGTGTCAACGATGCTAGTGATGGACTTAGGGTTGCGCGTAACATTGGTTATCCTATCATGATCAAGGCATCGGAGGGCGGCGGAGGAAAAGGAATTAGGAAGGCTAACAGTGACGATGAGTTTGCTAATTTCTTCAGACAGGTTCAAATTGAAGTGCCAAGCTCCCCTATCTTTGTCATGAAAGTTGCTGAAAATGCCCGACATCTTGAGGTTCAGCTTCTGGCGGATGAATACGGCAATGCGATTTCCCTGTTCGGTCGAGATTGCTCCGTACAGCGACGTCATCAGAAGATTATTGAAGAAGCGCCTGCCATGATAGCATCACCTGAAACCTTCAGAAAGATGGAAGAGGACGCTGTGAAGTTGGCCAAGCTGGTTGGCTATGTAAGTGCAGGGACCGTGGAATATCTCTACAACCCATCAGATGATACGTATTACTTCTTGGAATTAAACCCGCGATTACAGGTTGAACATCCCTGCACAGAATTCGTTGCTGATGTAAACCTTCCAGCGTGCCAGTTACAGGTTGCGATGGGGGTGCCCCTTCATCGTATCAAAGACATCCGTGTGTTGTATGGTAAACCAGCATTTGGAACGGATAACCTTAACTTGGACAGCTTTCCTGCGTACAAGAAGCCTAAAGGTCACGTGATCGCTACCAGGATTACTGCTGAGAATCCAGATGAGGGTTTCAAACCAAGTAGTGGTACAGTTCAGGAGCTTAACTTCCGTAGTATGAAGAATGTGTGGGGCTACTTCAGCGTGGCGGCGGCTGGTGGACTTCACGAGTACGCAGACTCACAATTTGGACATCTGTTCGCGTGGGGGGAGGACAGGGAAGATGCTAGAAGGAACATTGTCTTAGCGCTGAAGGAAATTTCCATCCGCGGTGATTTTCGCACGACTGTCGAGTACCTGATAAAACTACTGGAGCAAGATAGCTTCGTCAAAAACACATTCACCACGGGGTGGCTGGACTCACTCATTGCTGAGCGTGTGCAAACTGAGAAACCGGAGCCCATCTTAGGCGTGATCGCGGGCGCAATCCATGTGGCGGATGGCGCGATCAATAAGCGGTTTGCTAACTACAAGGACGCACTGGAGAGAGGTCAAGTTCTACCAGAAGATTATCTCAGCAACTCTGAAGATGTTGAGCTGATTCATGAGGGATTCAAATACTTCTTAAAGGCCACAAGATCTGGTCCAAACTCTTTCTTCCTCCAATTGAACGGGTCCTGCGTTGAGGTGGAAAGTCACAGACTTAGCGATGGTGGTTTGCTGTTGTCGTACGAAGGACACAGCCATACGTCATACATGAAGGAGGAGATTGACAAATATCGGATGACCATTGGTGGAATGACCTGGGTTTTCCAGAAGCAGAATGACCCTACAGTGTTAAGGGCTCCATCTGCGGGCAAGCTGATTGGCTATGTCGTCGAAGATGGAGGTCACGTGTTCCAGGGCGAATCTTTTGCTGAAATCGAGGTGATGAAGATGGTGATGCCTCTTACTGTGACAGAAAATGGATGtGTTCACTATATCAAGAGCCCAGGAGCTGTGCTAGACCCTGGTATGGTTGTCGCCAGTCTAGAATTAGATGACCCAAGTCGCGTAACGCAGGCTCAACTATACACAATCCCTTTTACTCTACCGGAGAAACCTACTAAAGACAAAGGCATGAAGTTACACCAGGTTTTCCAAACAGCCAAGGAGAACCTCATCAATGTCATGGACGGTTACTGTGTGGAGGAACCTCATTTCCACGCGCGACTTGAAGAAAACTCATTTCCTCTGAGGTCCCTACAACCTGACTTCATTCTGAACTCAGAACTACAGGAGATGATATCCTCCATATCTGGGCGTATACCTCCATCAGTCGAGGACACCATCAAGCGCCACTTGGCGAACTACGCCAGTAATCTTACTTCTCTACTTAGCCAATTCCCCAGTCAACAGATTGCTAATGTTGTAGATGCACATGCCGCGACACTCACGAAGCGAGAAGAGAGAGACGCGTTCTTCCTTAACACGCAAAGCATCGTACAGTTAGTTCAAAGATACCGTAATGGTGTTCGTGGTCACCTTAAGGCAGTTGTGCTTGGCCTGTTGAGGAAATACCTGCAGTCGGAGATTCTTTTTAACGAAGGGAATTTCGAGAAGTGTGTTACGATGCTTAGGAACAAGAACCCCAAGACTAAAGATTTGACGAGTGTCGTCTCCCGGTTTCTCACGTCAACTCCCAAAAAACATGCTGCCATCAGTTTATTGTATGACAGTAACAACGACTTATTATCGCAGATGATTGGATAA

Transcript

jg21038.t1

Protein

Uniprot

Uniprot term	Description
P11029	Acetyl-CoA carboxylase OS=Gallus gallus OX=9031 GN=ACAC PE=1 SV=1
Q13085	Acetyl-CoA carboxylase 1 OS=Homo sapiens OX=9606 GN=ACACA PE=1 SV=2
Q5SWU9	Acetyl-CoA carboxylase 1 OS=Mus musculus OX=10090 GN=Acaca PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00364	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF08326	ACC_central	Acetyl-CoA carboxylase, central region	Family	Interproscan
PF00289	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF02785	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF21385	ACCA_BT	Acetyl-CoA carboxylase, BT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000089	Domain	Biotin/lipoyl attachment	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR013537	Domain	Acetyl-CoA carboxylase, central domain	Interproscan
IPR013815	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR005481	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR011764	Domain	Biotin carboxylation domain	Interproscan
IPR011054	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR005482	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR049076	Family	Acetyl-CoA carboxylase	Interproscan
IPR011053	Homologous_superfamily	Single hybrid motif	Interproscan
IPR016185	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR001882	Binding_site	Biotin-binding site	Interproscan
IPR049074	Domain	Acetyl-CoA carboxylase, BT domain	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45728	ACETYL-COA CARBOXYLASE, ISOFORM A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003989	Molecular Function	acetyl-CoA carboxylase activity	Interproscan
GO:0006633	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01968	MCCC1, accA1; 3-methylcrotonyl-CoA carboxylase alpha subunit	EC:6.4.1.4	Valine, leucine and isoleucine degradation	ko00280	deepkoala