Gene detail

Detailed information of jg23125.t1 in Edwardsia elegans

Genomic Location: ctg_0369:141102...162465
NR annotation: XP_048582113.1, protein HIRA isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

jg23125.t1

ATGAGGCTTCTAAAACCAAGCTGGGTTTGTCATGAAGgcaaaCCCATCTTCTCTGTTGATATTCATCCAGATGGCTCAAGATTTGCTGTTGGCGGCCAGGGAGATGACTGTGGTAAGGTTTCTATATGGAACATGGCACCCATCAAGAATGAAGAGGATGAGATGAACGAGAATGTACCCAAACTATTATGTCAAATGGACAATCATCTGGCTTGCGTCAACTGCGTGAGGTGGTCTGGTAATGGTAAATACCTTGCGTCTGGAGGAGATGACAACCTGGTCATGATCTGGCAAATGACAAGGTATCAAGGACCTATGCCGACATTTGCTGGCGGAGGTGGCAAGTTGAATATTGAGCAATGGAGATGTGTTCACACATTAAGACAGCATAGTGGGGATGTGCTGGACTTGGCCTGGTCACCTGATGATTCCTACCTGGCATCTGCAAGTGTGGATAATACTGTTACTGTCTGGAATGGTCAAAGATTTCCAGAGGTCATCCAGACAATCAAAGGTCATACTGGGCTGGTAAAAGGTGTAACATGGGATCCTGTCGGCAAGTATCTGGCCTCACAGTCGGATGATAAAACCCTAAAAGTTTGGCGCACTACTGACTGGCAACAAGAGGTGTCAGTAAATGAGCCCTTCCTGGAATGCAGTGGCACAACACATGTGTTGAGGCTGAGCTGGTCACCAGACGGCCATTATGTTGTGTCGGCACATGCCATGAATAACTCTGGTCCAGTCGCCAAGATCCTGGAGAGGGATGGTTGGAAGACCAAGATGGATTTTGTTGGACACAGGAAAGCAATAACTTGTGTGCGATTTAATCCCAAGCTCTTTGTGAAAAAAGTGAATGGAGATTCAACAAGATTAAAGcAATATTCCTGTTGTGCGATTGGTTGTCGTGACAGATCCCTTTCTATCTGGCTGACATCACTCAAGAGGCCCCTTGTGGTAGTCCATGATCTCTTTGATCACTCCATCATGGATGTTGCATGGAGTCAATCTGGTTTTGAGCTGCTAGTGTGTTCATGGGATGGGTCTGTTGCTTTTGCGAGCTTCAATCCTGAAGAACTTGGTAAAGCCATGTCCCAAGAGGAGAAGGAAAAGTTCCACAAGCAAGTGTATGGTATCAGTATTAGCAGCAGCAAGACCAAGTTGGTCAGCTCCATTATCGAGAACCCAGAGATGCTGAAAATCCAACAAAGACACATCATGAAACAACAAACCCTGGCCAACTCCAACAAACCAGCCAttcctcccccacccctggTTCCCTCAGGCACGCCTACCAAGCAGACCGGACAGCACTTCACAAAtgGGTCTGTAAGTGCCAGTCCATCTAATTCAAGACTGGGTTTCTCAAGCCCTAGCATGTCCATGAGCCCTGGTAGTAAAATTAATATTTTAGATAAACAGAAAGAAACAAGAACCAAAGATGGAAGGAGACGGATCACTCCTGTGCTGGTTGCGCAAATGGATGTTAATGACACTCCATTACCATTTGGAAGTACTTCTCTTCCTGCGCCATCCCCAGTCTCTACTCCACCACAGCCATCCCCTTCCACCGCTGCGTCTATTGATGTTGCTAAAATACGGACTACATCACAGAACATGTCTGCATTGGACTCTCGGATTGGTGAAAATGCAACCACTGGATTCTCCAGCAGGCCCAAACCAGACAAAGTGCCAGAAAAAGCTGAAATGCCGTCCGTCAAGTCTACGACGACAACAAAGCCCACTACGTCTGTTCCTACCACAGCGACCCCACCAAAAGCAACCACAATTGCAGTGAAACGCAAAGCGGACACACCCACATCCGGGACCAAACGAGTGCGAAAAGATGCCCATGCCAAATCCGCTACTACCGCTTCCTCGTCACGTCACTCAAGAGAGGATCGGACCGATCACGAGATGGAGAGCTCTACATCACTGGTTACCAGTACCTCTCGACATACTGTCTGTATCCCGTCCCCTGCCCCCGAGAGAACGCTAGCGCAACAGATTAGCGGGAGTGGTGGAGAACCTGAGGTGACACTAGAGATAGAGAATAACCTTGGCTCTTCAGCTCATAGTGTCCATGTACTGAAGTGTATCGCATCTGGCAAGGTATCGTGGGAAGCCATGCTAACCAGCCCTGGTATTATATTAGCAGGCAGCAGAAATGTAGTGTGCGTTGCCTGTGCTAATCGAAGTTTGTCCATATTCTCGTTCTGCGGAAGGCGTCTTCAGCCTTCGTTTATACTTGAGTCACCGGCATCAGTGCTGCAGGTCAGCGGCCATTTTATccttttggtgacgtcatcgggTGGTGTGTATGTATGGGACACCAAGTTGTCAACGGTTGTCATAAAAAACGAGCCAGTCTTCCCCATATTATCAGGTGGAGGAGACCTGACTATCGCACGAACTTCTATCTCAGATCGAGGCTATCCCATAATCACTCTCTCAAACCAGGCTTCCTTTTCCTTTGAACCTACCGTTGGGGCATGGATGCAGTTGGTCCATGCTGAGGATCCGCTCCTTCTCAATGCTGATTACCAGGCCTCTGCACCTCGTCAAGATTCATTTTACGCGAGAGGACCGCTGGCCCAACTACAGGGGCACAGCACCAGGGTTTCTCGCCAGGGCGGCCGTCTATTCCGTTCCAATACAGGACGACAGCAGACATTAACAACATCCCATCTTGAGAATCAACTGTCCGTTTGCTTGACGCTGGGATCCTCCAATGAATATCACTTCTGGCTGCTGACTTACATCCGCCATCTCGTACACTCAGGAAGTGAGTCTCGCTTGAGGGAAGTCTGCGAGGAATTGCTGGGACCCCCTCACAGAACAAGTTCATTGGGAAAACATTCCACTGGCTGGAATCCTAAAGTACTGGGTTACAACAGACGGGATCTACTACGCGAGATTCTTCCCATTGTCGGTGAGTAA

Transcript

jg23125.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q8QFR2	Protein HIRA OS=Xenopus laevis OX=8355 GN=hira PE=1 SV=2
P79987	Protein HIRA OS=Gallus gallus OX=9031 GN=HIRA PE=1 SV=2
O42611	Protein HIRA OS=Takifugu rubripes OX=31033 GN=hira PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09453	HIRA_B	HIRA B motif	Motif	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07569	Hira	TUP1-like enhancer of split	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR031120	Family	WD repeat HIR1-like	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019015	Conserved_site	HIRA B motif	Interproscan
IPR011044	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011494	Domain	Protein HIRA-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13831	MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000417	Cellular Component	HIR complex	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006325	Biological Process	chromatin organization	Interproscan
GO:0006336	Biological Process	chromatin organization	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11293	HIRA, HIR1; protein HIRA/HIR1	-	Chromosome and associated proteins	ko03036	deepkoala