Gene detail

Detailed information of jg25736.t1 in Edwardsia elegans

Genomic Location: ctg_0025:261718...280410
NR annotation: XP_048581681.1, eukaryotic translation initiation factor 4 gamma 1-like isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

jg25736.t1

ATGCAGAAGGGGAAAGGTTCTACCGCTTCCCCGCCTGCAGGGGTCATTCAAGGAAGACCCCAACAACCCCCTCCTAGAGGTCCTACTCCTCCACAACAAAGACCAGAAGATTATCAACAGAGACCGCCACCAAACTATCCACCACAGggtgtgaATCCAATGGCACAGAATATGATATTCGCTGGCATGCAACAGGGTCCCCAAGTCCCAGGACAGCAGCCCAGAATGCCAAATCCACAGGCCTACCAAGGGGGTTATAGAGGGGGACATACAAGGCCCATGCATATCCCACGCCAACAGCAGGGAGGTCAGCAGATGTACTCATCTTCGCCGACAGGGGTCCATCAACAGATTGTCTTATCGCCCTTTATGCAACCACAGCAACCCCAGTATGTTTCACCAGGGCAGATGGATTACACTCAGATTCAAGTACAAAATGCACAGATACAGTATAGAACTCAAGGACAGCAAATGACACCTGGTGGATTTGTACAGCAAGTGCCGTCATATGCACCCTTCACCGCGCCGCAGGGTCCCAACACGATACAACAGCAACAAATGTACCAGCCGCCACAGCCGCTGTATGTTATTAGGCCTAATACAATACCTCCTAACATGCCAGGTACTCCACAATACCAGCCAATACGACAAGAGCCACCAAGGTCAACACCAAGGGAGAGAAAGATTATTCAAATTCGTGATCCCAATCGAGATAACAAAGATGTAACCCAAGAAATTCTGACATCACACAACAGAGGCAGTAATGTTTCAGGGGGAACACCCTCTAGTACTGGCTCTCCCAGCACCACCCCTGACGTATCCGGACAGTCTAGTAGTTCAAACACCCCGCCAATTAACTCGCATCAGGCTACAGAACAAACTCACACCTCGATTGGGGCTCAATTTGCAGCGCAGGTCGCTGCCACTCTTAGTAACACAAATGTGCAACCtccagaaaaattaaaaactagcCCTCAAGCAAGCAAATCCACATCACCAAAAATATCCACACAAGCTTCGGATATTAAGATAATTTCAATTCAAAAGACTGCACGGCCAACAGATACTAGTAAAGTTCCTGTTAAGGTTGCAGAACAGCCCAAAGTAAAGGTTGATGCAGCGCCGTCAAGTGAGCAGCCTACTAGTGTCGATGGTGCAAAAGTCAATGTAATAAAGCCCACACCTTCTAAGCCTGAAATTCCTACAGAACCTGCCCCAGTTTCTAGTGATTCTGTAAAGACTGACGTTAAGGAGGCTGCTTCTAAACCTGTAGAAGTGCCTAGCTTAGCTGTACAGGCAGAGAAACAGGTAGACAGGGTACAGAATGGCTtaactagtccagttccagttAAAGAGGAAATCATTGCAACAGAAAATAAGCAAGAGGTTGAAATGCCACCGCcggaaaaagaaataaaagaaattatgCCTGTAACAGACACTAAGATTGAAGAAAGTACCCCACCTGCTGCTCCTGTAGAAACGGTGGAAGCCCCAAACCCAGCCCCGCCTAAGGCTGAGAAAGCAGTACCAGTTAAAACTGAGAAAGCAGTACCAGCTAAAACTGAGAAAGCAGTCCCAGCTGAAACTGAGAAAGCAGTACCAGCTAAAACAGAAGAAGAAAATGTAGAGGTTGCTGAACCTGTCCTTATTGAAGGGACAGTCAATGGAATTGAGTCAGAGCCAGCCAAGCTGAAGCCTACATTACCAGCTACAGCCACAGATCAATCAGTGAAAGATGCACCAaagaaaaagaataaaaagcaAAGGCTACGGGACATGGAGAAAAAGTCTGAGAAGGCTGACCTTATGGATGCTTACACTGAGCGGCCTGTGAAAGACGAGTCTGCAGAGGAGATAAAGCAGGACGAAGAGGAGGAAGTGAAGGAATCGCCAACTGAGGAACATGTTCCCTCTGAAGAGGAGACCTGGGAAGATAAGGATAAGGAAATGGATGAAGGAATTGTATTTCCTGACGCTGAAACAAAGGATGGCAAGTTGATCTATGATCGAGATTTCCTGCTGCAGTTCCAGTACAATCCACTGTGTACAGAGAAGCCAGAGGGACTACCTGATATTGAAGTGGTCCTGAACTCTATCTCAGCAAGGGGACCTCCTAAGCAGATCGCGCCTCGAATGGGAGGTGGTGGTGTTGACTTCATGATGCCAAGTTACATGCGACCATCAAAAGGAAGTggaaatacaggaaacaTTCAACGTAGCAACAAGGGGGGTCGCATGCCGCCCAAGAAAATTATACATACCATTGGCCATAAGAATGTTGAGTTGAAACGCAGTGAAAATAGATGGGTAAGACCAACTGAAAAAGTCGTAGAAGGACAAGAGGGCAAACCAGAGAGCAAAACAGAGgaggtTTTAAGAACGTTCCGAGGTATTCTTAATAAGCTTACGCCGCAGAAGTTCCAAACCTTGGCTCAGAAAGTGCTTGAACTTGAAATTGACACTCGAGAGCGCCTTGAAGGGATTATTGACATTATTTTTGAAAAGGCAATCAGTGAACCAGGCTTCAGTGTTGCATATGCCAACATGTGCCGATGTTTATTAGGAATTCAAGTCAAAATAGAAAAAGATGGCAAAGAATCAACACTTCTATTCCGTAAAATCCTGCTCAACAAGTGCCAGAAGGAATTTGAAAAGGATAAAAATGATGAGACAAATATCCATAAACAAATGGAGGAGCTTTTAAATGAAGGACTCCCGGAAGAGGAATACAAGATAAAGAAAGCTGTACTTGAACAAGAAGAAAGGCTGGGCAGAAGAAGGACCCTCGgaaatatcagattcatcgGTGAACTCTTtaaactcaagatgttgaCGGAGAGCATTATGCATGCTTGCGTTGTCAAGTTACTTAAAAGCAATGACGAGGAATCATTTGAGTGCCTGTGCAAGCTTCTGTCAACAATTGGCAAGGATTTGGATCACATCAAAGCCAAGCCACGAATGGACCAATATTTTGGTCAAATGGGCAAGATCATTGATTTGAAGAAAACCTCCTCCAGAGTGCGGTTCATGCTTGAAGATGTGCGGGAACTTCGTTTTAGCAATTGGGTTCCTCGCAGAGATGATGGTAGTAATCCAAAGACTATTGATCAAATCCACAAGGAAGCAGCCGAGGAGGATAAGAAAACACAGTTGATGCTGCAACAGCACAAGCAAAATAAATCTGTCAAAGACGAGACATGGACGACAGTGCCGGGGAGGGGTCCAAGGAATGTCAATGTCGACCCTAAGAAGTTCCAAAATGTACAAAAGCGCACTAATGTTGATACGGAGAGTATATCCCTTGGCCCTGGTGGGCGAGGTCTTGGAGCTTGGGCACGCGGAAGTAGCGGAGGGACTGGTCCTTCCTCTTCAGCACCTCCACCAAGTCAACAACCAGAACAAGAACCCAGGGGAAACAGATTCTCAGCTCTGGGTGGTGAAGCAAGGAGAGGACCAGGGGCGTCAAGGCAAAATTTTGGTGCTGGTCGCCAAGAAGCACGTAGCCCCGGCCCTAACCCTAGATGGGGGGCTCCATCCGCTCCTGCATCATCTGAAAGAGAGAAGGCTCTGGAGGCAGCTAGAAACATTGGTCAGCCCAAGCCGCAGCAGACATCAAGACCTGGGTCAGGAAGGGCATCGCCTGTCACTGAACCTGAGGCTGAACCTGAACCTGCTGCATCCACACCCCCACCGCCGGAAGTACCTGCTGTTAAAGAACTTACAGAAGATGAAATCCAGAACAAAGTCACTGGTATCATCAATGAGTTCCATGATATAAGGGATATTAATGAGGCTTTGAATGTATCCAAGAATTAA

Transcript

jg25736.t1

Protein

Uniprot

Uniprot term	Description
O43432	Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens OX=9606 GN=EIF4G3 PE=1 SV=2
Q80XI3	Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus OX=10090 GN=Eif4g3 PE=1 SV=2
Q04637	Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens OX=9606 GN=EIF4G1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045208	Family	Initiation factor 4G	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23253	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0016281	Cellular Component	eukaryotic translation initiation factor 4F complex	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03260	EIF4G; translation initiation factor 4G	-	Translation factors	ko03012	deepkoala