Genomic Location: ctg_0007:624928...631119
NR annotation: EDO42056.1, predicted protein, partial [Nematostella vectensis]
Species Edwardsia elegans · all data for this species · gene families
| CDS |
| jg26583.t2 |
| Transcript |
| jg26583.t2 |
| Protein |
| jg26583.t2 |
| UniProt accession | Description |
|---|---|
| Q61493 | DNA polymerase zeta catalytic subunit OS=Mus musculus OX=10090 GN=Rev3l PE=1 SV=3 |
| O60673 | DNA polymerase zeta catalytic subunit OS=Homo sapiens OX=9606 GN=REV3L PE=1 SV=2 |
| Q9GSR1 | DNA polymerase zeta catalytic subunit OS=Drosophila melanogaster OX=7227 GN=PolZ1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001938 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00136 all species → | DNA_pol_B | DNA polymerase family B | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006134 all species → | Domain | DNA-directed DNA polymerase, family B, multifunctional domain | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR042087 all species → | Homologous_superfamily | DNA polymerase family B, thumb domain | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR030559 all species → | Family | DNA polymerase zeta catalytic subunit | Interproscan |
| IPR017964 all species → | Conserved_site | DNA-directed DNA polymerase, family B, conserved site | Interproscan |
| IPR006172 all species → | Family | DNA-directed DNA polymerase, family B | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR023211 all species → | Homologous_superfamily | DNA polymerase, palm domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45812 all species → | DNA POLYMERASE ZETA CATALYTIC SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0000724 all species → | Biological Process | double-strand break repair via homologous recombination | Interproscan |
| GO:0003887 all species → | Molecular Function | DNA-directed DNA polymerase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0016035 all species → | Cellular Component | zeta DNA polymerase complex | Interproscan |
| GO:0019985 all species → | Biological Process | translesion synthesis | Interproscan |
| GO:0042276 all species → | Biological Process | error-prone translesion synthesis | Interproscan |
jg26583.t2.Genes whose expression across the transcriptome samples of Edwardsia elegans tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Edwardsia elegans, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
