Gene detail

Detailed information of jg27766.t1 in Edwardsia elegans

Genomic Location: ctg_0454:67271...80746
NR annotation: KXJ10001.1, RNA-directed DNA polymerase from mobile element jockey [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

jg27766.t1

atggcggacagtaAGCAACAGCGAACTACAGCGGCGGCCACAAACGACGACGAAAAGTCACTGCGCAAAGAGTCCAAAGAACTGATAAATATAAAGCTTAAAGAATACCACGACTCCCTTGGCGACGCCCTTAAAGATAATCCCAAGCGGTTTTGGAGTTATTACAGATACAAAACCAAGTCCAACTCGATCCCTGCTAATGTCACATACGGTGAAAACAATCTTTTAACAGCCCAGGGCAAGGCTGAGGCTTTCAACAAATTCTTCTTTTCCACCTTCACCGAAGAAGCAGACGAAATGCCTCCAACCAACACGGAGCGTTCTCTGTTTGACAGTCTCACACTCAGTGAGAGTGAAGTGTTCGAAGTTCTGTCTAAACTGGACCCGCACAAAGCCCCCGGCCCTGATGGAGTACCCACTACTGTTCTAAAGGAATGTGCACGCGAGCTCTCACCTCTCTGCGCCCCTCTCAACCTGACTCTTGTCTCTGGCAAGGTTCCTAAGAGTGGAAACATCGTCTCCTGTTCAAGCTCTCTCAGTACGGAATCGGTGGCAGTCTACTCAAGTGGCTTGAAAGCTATCTCAAGGGACGTGGCCAGCGCTGTCTGGTCCACGGCTTCATCAAGTCGGTGTCCTGTTCCATCTGGAGTCCCTCAGGGCAGTATCCTAGGCCCTCTGCTGTTCCTCGTTTACGTAAACGATCTTCCTGCTGCGACTGAGAACTCAACTGTGGCTCTGTTTGCCGACGATTCGAAGTGCTCCCGCATCATCAACTCTCCTGCTGACTGCGCCTTGCTGCAAGAAGACCTTGACAGTTTGCTGTGCTGGAGCAGAGATTGGCGTCTAAAGTTTAACACGTCCAAGTGTGAGGTTCTAACAGTCACACGGAAGAGACAGCCCATCTCATGTAACTATCAGCTGGACTGTTCCTCTCTAAAGCACTGCTACGAGGCAAGAGGCTGTATTATTGACAAAAGAGAGGACAAAGGAAGTTATGACAACGAACTAAATGTAACAGTCAAACAAGAACCACCTGAAGAAGAGATCGACTTCTCTGCGATAATAGGAGACGTTTCAAGAAATCATAGTAAATGCTTCAACCCTTCTAGCATCCAAGAacaacatgaacgaacacattcagtaTTAAAGCCACATGAATGcaagcagtgcggtaaatgctACACTCGTTCTAGTCACCTTGTTgttcatgaacgaacacattcaggattaaagccatatgaatgtgaacagtgtgggaaatgcttcagtcGCTCTAATGACCTTACAAAGCACAAACGAACGCACTCAGGagagaagccatatgaatgcaaacattgtgggaaatttttcaaacaaTCCTCTAACCTTAGATCCCATGAACGAAgacattcaggattaaagccatatgGGATTAATAcaggattaaagccatatgaatgcaaacagtgtgggaaatgcttcaaTGGCTCCTTTAACCTTAGagcccatgaacgaacacattcgacagagaagccatatgaatgtaagcagTGTGGTAAATCCTTCAGACAAACTTGTAACCTTAGATCCCACGAACGAACgcattcaggattaaagccatatgaatgcaaacagtgtagGAAATGCTTCACTCGTTCTTGTGAGCTTGTAGTTcatgaacgaatacattcaggattgaagccatatgaatgcaagcagtgtggtaaatgcttcACTCGTTCTTGCGATCGTGTAGTTCATGAACGAagacattcaggattgaagccatatgaatgcaagcagtgtgggaaatgcttcacTCGTTCATGTGATCTTGTAGTTCATGAACGAACTCAtacaggattgaagccatatgaatgcaagcagtgtgggAAATCCTTCAGTCAATCCTCTACCCTTAGATCCCATGAAcgaactcattcaggattgaagccatatgaatgcaagcagtgtgggAAATTCTTCAGTCAGTCCTCCTCCCTTAGATCCCACGAAcgaactcattcaggattgacgccatatgaatgcaagcagtgtggtaaatgcttcACTCGTTCTTGTGATCTTGTAGTTCATGAACGAACTCATTCAGGAAAACCCCtatga

Transcript

jg27766.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24379	KRAB AND ZINC FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala