Detailed information of jg28292.t1 in Edwardsia elegans

Genomic Location: ctg_0059:141335...149296
NR annotation: KXJ21238.1, Pre-mRNA-processing-splicing factor 8 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6P2Q9Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
Q99PV0Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
P34369Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans OX=6239 GN=prp-8 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Jab_MPN

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08084PROCTPROCT (NUC072) domainDomainInterproscan
PF01926MMR_HSR150S ribosome-binding GTPaseFamilyInterproscan
PF01398JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan
PF12134PRP8_domainIVPRP8 domain IV coreDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012984DomainPROCT domainInterproscan
IPR021983DomainPRP8 domain IV coreInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000555DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR006073DomainGTP binding domainInterproscan
IPR037518DomainMPN domainInterproscan
IPR027652FamilyPre-mRNA-processing-splicing factor 8Interproscan
IPR043172Homologous_superfamilyPrp8 RNase domain IV, palm regionInterproscan
IPR043173Homologous_superfamilyPrp8 RNase domain IV, fingers regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11140PRE-MRNA SPLICING FACTOR PRP8Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008233Molecular Functionpeptidase activityInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620Molecular FunctionU2 snRNA bindingInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157Molecular Functionpre-mRNA intronic bindingInterproscan

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