Gene detail

Detailed information of jg29291.t1 in Edwardsia elegans

Genomic Location: ctg_0538:12126...47327
NR annotation: XP_048584251.1, 3'-5' RNA helicase YTHDC2 [Nematostella vectensis]
Species Edwardsia elegans · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

jg29291.t1

ATGATGTCAACAACCCTTGATCAATCTACCAAAGCACAGgatgaaGTTGACGAAGACGAGTTGTTATGTCGCGAGATGGACGATTGTATTTCCGATGCTTGGCTCAAGggagatGATGATTCCTTTGTTCAAATTCTTCATCTGATCATGAATGAGAACATCAGTGGTGCCCAGATAACGCATCTCCCTCTCTCCCTGTTGCTTTGTCACTCGCGCTACCAAGTTAGCGGCAGCTGTCACGAAACCCGGCTACTTCGCGACAACAATATCCCTTTCCTTCCTCAGGCAGTGATGGGTGTTTTATTCGCGGGAAAGCCgcatttcgtgatcgcggccacCATCATGGACGCGCCCAAAAAATGGGCTGGGGCGGGCGCCGAGGGCAGGCCCCAGGCGACGCCCCTCATGGTGGCAGCAGGGCGTGGCTGTGTCGGCGTGGTGGAGCAGCTACTGACGGCCCCAACCCCACTCGAACCCAAGAATAACTGGAACGCCATGGACTGGGCAAAGAAATGGGGtcaaaaaatcatgaaaagcTTACAGCGATCCCCCCGTGTGTCGTACAGCGATGATATCTCCCTAGAGAAACAAAGCAACGAGCTTAGCGAAGAGAACAAACAACTCTTGGCCGTCTACCACAAGACATTTGACGACGACCGGGTGGATTTGGATCTCATCTTTAGCCTGATCGCCTGCATCTGCAACACAGAAAAACAAGGCGCCATCTTGGTTTTCTTGCCTGGATATGATGAGATCATCACGTTACGTGACCGATTGGCGACTAGCAAGGAATATGGAAACACTAAACGCTATCAACTATTTACTTTACATTCCTCGATGCAGCCCGGAGAGCAACGAAAGGTCTTCAAAAAACTACCTTCGTTCGTCCGCAAGATCATTCTGTCCACCAATATCGCTGAGACGAGCGTGACAATCGATGACGTCGTATTCGTGATAGACTCCGGAAAAGTGAAGGAGAAATCCTTTGATGCCCTGACGTCAGTGTCGACTCTCCACTCGGCCTGGGTATCGAAGGCGAGTGCCATCCAAAGACGAGGAAGAGCCGGTCGGTGTTCACCAGGCACCTGCTTTCATCTGTTCAGTCGTGTTCGGCACGAGAGTCTACAGCAGTACCAGGTCCCTGAGCTGCTCCGCATCCCGCTACAGGAGCTGTGTCTGCATACGAAGTTGCTCGCCAACTCATCGACGTCCATTGCCGATTTCTTGGCCAAGGCACCAGAGCCCCCTGCTTTCCTGGTGTTACGTAATGCCGTTACTCTGCTTAAGACTATTGACGCTTTGGATAAGTGGGAAGACCTCACCGATCTCGGTCGCCATCTTGCCGATCTGCCAGTCGAGCCTCGTCTTGGTAAAATGATCCTGTATTCGGTGGTGTTGAAGTGTATCGACCCTGTTGTTACTATCGCGTGTGCGCTGGCCTACAGGGACCCATTTGTTCTTCCAATGTACGCGTCCGAGAAGCGAGCAGCAGCTTTGGCTAAGAAGAGGTCTCAACTCATTGGTCACCTGAAAGGCTGTGGATTTATTCGACCGCGCGGTGCTGGGGACCTTAGGGACCTGAACACTAACTCCAATAACTGGGCTGTCGTCAAGGCGGCCCTGTGTGCTGGTATGTATCCTCAAATCGCCCGTGTTGATCGTGCAGACAATAAGCTAACCACTCCTAAAGAGTCCAAGGTGCGTATCCACACTTCCTCCATTCTCTTCCAAACGTCTGACAAGAAGGAGTCGCAGAGTAGTACCCAGGCTAAGGCCGTGAAGCAGCTGCCCACTGATTGGCTCATGTACGAAGAAATGACAAGgatgTACACATCGGTTTCCATTAAATGCTGCACCGCTGTCAATCCTATTGCGGTTGCGCTTTTCACTGGACCGAGTCTCTCCTCGCCTAATCTGGGGACTGGGGACAACAAATCACGTGATGCTGAGTGGCGGAACACTGAAGGACGCTTGGATAGCGAGAGCAGCGAGAGCGAGACGGAAGAGAGTAAGCCTGGAGACGAGTCACGTGATAACCAGGCGGAGCTTAAGATGGACGAGTGGATAAACTTGACCGGAAGTCACGAGACCGTAGAACTGGCGTCGTTTCTGAGGCACAAGCTTCAGATCGTGTTCATGCGTCGGATACGTGCTCCGTCGCGGCCCTGGTCACAAGTGGACGAGACGGTTGTTAGAGCTGTGGTAGCAGTCCTCACGGCGGAAGAAGAAATCATGAACCCTGACCTCTACCCAAAGCAAAGGAAAACGAGACCAGAAGGAGCCCTTGAATCAAGAGGCAGAAATGACAGGTCTTATCCGTCTGATAGATACCCACTGCCTAGGGATCGCAACAGTCGAGACCACACATCGTCTAATCCTCGCCCCGACTCATCGCCGTCACATCAGGTGTCGTCGCGGCGGTCGATTGAGAGTTCTCCCGCGAGGGCGTCACCGCAACAAGACAAGCTGACAGAAGCTCGTTACTTCATCATGAAATGCAACAACCAGCGCAACCTAGACATCTCCATGGCAAAGGGAATCTGGGCCACCACTATCGCTAATGAGAAGAAACTCAACAGAGCTTTTAGGgaAAGCAAGAAAGTGGTTCTTATATTTTCGGTGCAAGGAAGCGGACATTTTCAAGGTGTTGCTCACATGATGTCACCGATTGGTCGTGAGAAGTCGCCCGAGTTCGGCTCCAGTTCTCTTGGCGGAGTCTTTACAGTGGAGTGGGTCCGAAAGGCCAGCATTCCATTCCAGCAAGCACACCATTTAGTGAATCCGTGGAATGATCACAAGAAAGTCCAGATCAGCAGAGATGGTCAGGAACTAGAGCCGAGCGTGGGTAGTGAGCTAAGCAAGCTGTGGGACTTAGACCTGAACAACAGCCCGTCCAGGTACGCGCGACAAGGCAGCGGTGCTACAAACAATAACAGGCGCGGCGGCAAGCCTCAATCTGAACCCAACACAGGCAGCCCGGTCAAATGGCAGCAGGGAATACCGCCTGCAATGCAACAGTCAGCGGCTTACACGGGAATGCCGCAAGTGTATGCGCCACACGCTGCCTCGATGCCAATTCCGGTCCCAGTCCCCTCGCAGCACTCTCGTCATACTCTGCTCCAGGCTTACCCTCGTCCAAATATAATGGCCGCGCCGCAGCCTGTCCCCATTCGTGCCCAGTCTCCGTATGCTGTACAGCCGCACATGCGCACAACGAGATATCCAAGTCACGTGATGCCGGGAGTAATGCAACCTCAGCCAGCAAGGACCGCGGGCGCACACGTGATGAGACCAGGGTCCTACCCTCCGCCCAAGAGATAA

Transcript

jg29291.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2RR83	3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1
Q5R746	3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2
Q9H6S0	3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003208 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04146 all species →	YTH	YT521-B-like domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007275 all species →	Domain	YTH domain	Interproscan
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20099	YTHDC2; ATP-dependent RNA helicase YTHDC2	EC:5.6.2.6	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.