Genomic Location: ctg_0140:48553...49854
NR annotation: XP_031552160.1, medium-chain acyl-CoA ligase ACSF2, mitochondrial-like isoform X1 [Actinia tenebrosa]
Species Edwardsia elegans · all data for this species · gene families
| CDS |
| jg32007.t1 |
| Transcript |
| jg32007.t1 |
| Protein |
| jg32007.t1 |
| UniProt accession | Description |
|---|---|
| Q7NSY7 | Acetyl-coenzyme A synthetase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 GN=acsA PE=3 SV=1 |
| O31827 | Plipastatin synthase subunit E OS=Bacillus subtilis (strain 168) OX=224308 GN=ppsE PE=1 SV=1 |
| P46450 | Long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=fadD PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003010 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00501 all species → | AMP-binding | AMP-binding enzyme | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR042099 all species → | Homologous_superfamily | ANL, N-terminal domain | Interproscan |
| IPR000873 all species → | Domain | AMP-dependent synthetase/ligase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42814 all species → | AMP-BINDING DOMAIN-CONTAINING PROTEIN | Interproscan |
jg32007.t1 in Edwardsia elegans.jg32007.t1.Genes whose expression across the transcriptome samples of Edwardsia elegans tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Edwardsia elegans, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
