Gene detail

Detailed information of jg35601.t1 in Edwardsia elegans

Genomic Location: ctg_0440:33271...46181
NR annotation: XP_001624074.2, U3 small nucleolar RNA-associated protein 15 homolog isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5F3D7	U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus OX=9031 GN=UTP15 PE=2 SV=1
Q5XGE2	U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus tropicalis OX=8364 GN=utp15 PE=2 SV=1
Q7ZXZ2	U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus laevis OX=8355 GN=utp15 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF09384	UTP15_C	UTP15 C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018983	Domain	U3 small nucleolar RNA-associated protein 15, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19924	UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0045943	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14549	UTP15; U3 small nucleolar RNA-associated protein 15	-	Ribosome biogenesis	ko03009	deepkoala