Gene detail

Detailed information of jg35603.t1 in Edwardsia elegans

Genomic Location: ctg_0440:57494...62758
NR annotation: XP_048583766.1, ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Nematostella vectensis]
Species Edwardsia elegans · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O76031	ATP-dependent clpX-like chaperone, mitochondrial OS=Homo sapiens OX=9606 GN=CLPX PE=1 SV=2
Q5R7N3	ATP-dependent clpX-like chaperone, mitochondrial OS=Pongo abelii OX=9601 GN=CLPX PE=2 SV=1
Q5U2U0	ATP-dependent clpX-like chaperone, mitochondrial OS=Rattus norvegicus OX=10116 GN=Clpx PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10431 all species →	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan
PF07724 all species →	AAA_2	AAA domain (Cdc48 subfamily)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019489 all species →	Domain	Clp ATPase, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR050052 all species →	Family	ATP-dependent Clp protease ATP-binding subunit ClpX	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48102 all species →	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for jg35603.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.