Gene detail

Detailed information of jg39372.t1 in Edwardsia elegans

Genomic Location: ctg_0164:243426...266126
NR annotation: XP_032234471.2, trinucleotide repeat-containing gene 6A protein isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

jg39372.t1

ATGCCTAAGGATGACAAAAAGGAGTTCTTTAAATCACTTGGGGTGGACAATTCATCTACGGAAAATGACATAAAACGAGCTTACAAGAGAATCGCTTTACAATGTCACCCAGATAAGAATCCTGGCGACAGTTCTTCTAGAAGGCAGTTCGACGAAGTTAGCAAAGCTTTCGAGAGCTTAGTTCTAGAATACAGCAATGATTCTATCAGAGATCACGATAAGGTTTTCTTCGACTTTCTACGAGACATTTTATTTGCATCTGATGACATTAGTGACTTCTTTACATACTTCTGTGGTTCTAAACAACACTCTTGTAATTCTTCAGAAAGTGACCCTGATTTTAGatatcAAGATGATGAAGATGAGGAGGATATTGATGGCGAACAAGATCTGGATAGTGTCTTGGAAATTGTCAAGAATCGGAAGAAGAAGGGTAAATCTGTTCCAGAAGAATTTCGTGAAGAAAAGCTTCAGGAATTGAAGGCAAAACTGTTACAACACAAGGAGGATATGAAAAGGGATAGTTCTAAAAAGCAAGCAGCAAAGAAAGGCAAAACACAACCTGTTCCTGTGGCTAAGCCAAAACCAAAGAGCAAAAAACAACTGTTAGCTGAGCAACGGCGAAGAGCTAAGGAAATGGAACAGATCGCTATGGAGCTTGAGGAAAAGAGAAAGGAGGATGAGGAAAAAGATAAACAGAGGAAACAGTTGGAAGTTGAAAAACAGAAGAGATTCGAGGAAGAGAGAATCAGAGCACAAAATGAAGAGCGAAAACGAAGAGAAAGGGAACAAAAAGAGCGCGAAAAGTTGCAAAAGCAGGAGCAGGAAAAGGAGGAGAGGCAACGAAGACAACATGAGGAggagaaaaagagaaaagaagaggaagaaaaaCGGAAGAAAGCTGAAAAAGAGAAAGTGGAAAAAGAGAAGGCTGCTAAGAAGGCTGCGTTGCAGGCTGCAAAAGAAAAAGAAGAACAAGCTAAAGCAGCTAACAAAAGTCAGTCTTTAAAGCggcagcaacagcaacaaagAACGGACCAGCAACAGTACCCTAGGGAGATACCACCGCGATTccagaaaatgaaaaagcaACAACAGATGCAGCAACCATTACCTCCTTCACAACCTCCACTTAGCACACCCGCACAACAACAGAACAAGTTCCAGTCCAAACCACAACCACCTATTGGCAAGAAAAAAGATCCAAATCGCTTTGCAGCGAAGGAGTTTGCGGACCTTGTAAATGAGGTTGATGATGGAGGGTGGACTAAAGCTTCGCAGTGCAAAGGGAGCGGTTGGGTTCCACCCACAGAGGACTGGGAAGAGGATATAGCAGAAAAATGGGGGCCTGTGGATAGACAGTGGGGTGACAAGGAAGGGAACTGGGAACAAGTTGTTGTTGATGGAAACGATGGCGAGTGTTGGCCAGCTGTAGGCAATAAAGGCTCCATTGGTGACAAACCTAAAACTTCATTGGACAATGCTCTTACTAAAGCCACTTCTTCTGGAACTTCATCTTCTATTTCTGCTTCTAAGTCGGACTCAAGGGTCGGAACTATTGGTTCTAAGGCTTCTTCTTCATCTACAAACGTGGACTGGAATAGTAACCGAAATTCTGGCAGTTTTCCTATAACATCTGAAAACTGGGACGCTACTTGTGACGAATCCATTGATCGTGCACTTGATGCGGCGGACTCTAAGGGTAGTGTAGGGCCAGGGGGGGTTAGCTGGGGTGGTATGGGTACGGGAGGGCTAGGAGGACTGATAGGCACACCTCTAGGCTGGGACCCATCAAAGGATAATGCTACAAAGCTCCAGGACTGGGCTAATAAGCAGGGGTGGGGGAGTGAAAACCCCCCTGCCGACTCTCTTTCATGGAGTAAAACTCCCGGAAAAGGACCTAAAACTAAGCCTGTGACAACTACAACTTCAAATGCGGCTCCCACATGGGGCGGAACACCTGCGGAAACGAGCTCTGGATGGGTTGAATCCTCAGGAACTGCCAATAACGCATCTGGGAAAACTTCATCATCAGAATGGGATTCTAAAGCCACTACTGTGAACAGTTCTCAGTCGACTACTACTTCTAGCGTTACTAAAACATCAGGGAACACTCTTTCTAGCAAACCAGATAGCAAAACAAATCCGTCAGGGTGGGGCGATGCAGGTTGGCCTGTGTCTGCAAGTGTGGCAGGGACTGCATGTTGGGATAGCACTGCCACGACTGCAAAGAAATCTGTGGATTCTAAGGATGCTAAGCTTAGCCATGACAAGGTGTCAGGCTGGTTAGAGAACTCTTTACCTTCGTCGTCAGGGAATACAGGGAACACGGAATGGAATGCTGAAGGGAATAGGGAACATGATGAAGGGTCTGAAGGATCGTGGGATGGCTGGACAACAGCTTCTTCTAAACGAAATAGGGCACCTAAGCCAAATCCAGCTAATGACAGTAATGCATGGATGAGCAGATCTCTCAAGCAGTTACTTGATATGGGATTTAAGCAAGAAGATGCCGAGAAGGCGTTGCGAGCAAATCACATGAATATCGAGAGTGCTATAGGCGACCTTCTTTCTATGACTGCGAATGCCATCGAAGAGGCAAGCCGTGCATCAGCCGCTAGAACAGGGGAACCAGATCCTGCAGAGGCATCTCGAATCCAACAGCAAATACCACCTAGCAAGCAGAACCGCAAACAACGACGAAAGActcagcagcagcaacaactaCAACAGCAGCAGACTAATCCGAAACAGGACTCGAAAGGTGCTACGGACTGTGCTAGTAATCAGTCCAATTCAAGTGACTCTTCATCTAAGAATGCTAAGACTGACGGCACTAATAAAGATACATGCGTGCAGTCTAGTGAAGCACAACCTTCCAGTAGGCCACCAGTCTCTCAACAAGGACCTGATGCCAAAGCTAGTGTCGCTAAAACAATCACTGAACAGTCGCCGCATCCTTCTCCAGGTAAAACGGCCAGCACTGCAAACCACACCGCTGCTAATCAGAAAAGGAACGCCACTGGGGCTGGGCTTATACAAACACCTGTCCCGGGGGCATCTAGTCCCCTGCGTCCGCCTATTACCCATCCATTGCTACATCAACAGTTTGTGCATCAAGTGCAGTTACACCAGCTCCGTATGGCCCAGGGAGGTCTGCTGCAGCCACCAATTAGCCCTCAGCAGTTTGCACTGTTACAGCAGATGGCACAGTTACAGTTAGTTCAACAAAGGCTGGCACAGCAGCAGCTCAACCAAAAACATGCGCCACTTAATATACAGACGCAGCAACAGTTGTATCAGCAGCAACAGCAGATCGCTCTGATGATGGCTCAGTTACAACAGCAGCTCATTCAGCAACAGCAGCAGACGCAGCATTTACCAGGGAGGTTCCCCAACCCAACCTTCCAGCAGTCCCCGCTTCTGCAGCAGCAGACTCCATCTGCCCAATCCTCGACTCCACAAGGGAGTAAGAGCCCTAGTAAGAATGCAGCTGCCGATAAAGCAACTACAGAAACATCACAGAGTAAACCTGAAGATACCAGCAGGGCACAACCACCAGAAAGACCACCAGTAACCACTGCTCCGTCAGACGATCGAAGCAAGCAGCAGTCTCCGGCACCTCAGTCACGCCTCACACAGTGGAAGCAGCCCTTGTTGCCTGACCCTGAGCAGCCACCACAAGGTATGGATGGTAAGCCACCGATTAATTGGACGACAGGAAAGCCTGAGTCTGGGAATCTGTTCACAAGCCCTACCATCTCCACCAGTGTCGACTTTGCAGGCAACCCCAGTCTGTCGCCACGAGCAAACAGAATCTCGGATCCAGTCTCGAGTAGGTGGGGTGTTGATGCCTCATTGAAGCTGTCCGCCGACCCTCCTGAGTTCAAGCCTGGCGTCCCATGGCGGCCACGAGcggaaggaggggaggggaagatGAAATATTCATTTGGCATCGCATCTTCCCCCTGGGGGGTCCCAGAAGGCAGCAATTCTCTGCTAGCCAAATCAACAGCCAATACAGGAGGTATACGACCCCCGCCCGGGTTGAACAGTTCTAGCGGCGTCCCTGATTCCCCTGGATTTGAAGAAGAGCAGCCAACATGGCTGAAGAATTTGATCGATGTCGGACCACACAGCTTTGGACAGGATCTGCCACAAGGGGATCTGAACTTCAGTCGTCTCGGTTTTCCCTCCAGCTCCTGGAGTATACAAGATGGAAGTAGCTTCTCCTCCCTTACTCCTAACCCACAGCCATGGGCAGCCCCTGGCGGCCCAACCCCCAGCGCTGCAGCAGCGTCAACAGCCGCTGCTATGACAAGTAGTGGTGGTCCATTGGCAGGCACTGTGAATGCAAGCTCCGCCGAGCAGTCCAAGCCATCAGATGTAGGCATCAGCTCCTGGTCTGCAAACCAACCTATTCCAAGTGCTGAGGAAAAGCGGGGCCGTCCAGCAGGGGCACCGGAGCTGCAGCCACCATTATCTGCGGGACCAATGTCCAGAAGCAGTGCTTTAGGTGGGCGTGGTGCTAACCCCATGTCCACGTGGCTGGTGCTTAGGAACCTCTCATCAAGGGCTGATCCAAATGCTCTGCGTGCGATCTGCCAACAACACGGCCCCCTTCTGACCTTCCAGCTTAACCTTCGTCACGGCAACAGCCTCATTCGCTACGGCAACAAGGACCAAGCCGGGAGCGCCAGGAATGTCCTCAACGGCATGATGGTGAAGGGGATGCAGCTAGTGGCAGACTTCGCTACTGACAGTGATATCGGCAGCTTCTTCGAGCAGACCCCAGACTGGAGCTCTACTGCTTACCCTGCTAATAATACGGCATTTGGTAGCCAATGGTCATCCCAAAACACGCTTGGTGGAATGCAACAAGCCGATGACCCGTCCAGACGACAAATGCACCACGGACAAGCGCCATCCATGGGACAAGTTGGACATGCTCCTGGTATGGATAGCAAACCTCCCCAGGGACCTCCCCCCGTGGCAGGCATTGTTCCTCCCGGGATGCAGTGGGGTACTGCACAGCTGTGGGGTCAGCCAGGAGCTGTCGCTGGGTTCCCTCCTCAGGTCCCTAGTATGTGGTCCTTCGCGACTGGAAACCCTCGGGAAGTGGAGCCTCAGTCGGCTACTAGCGAGAATGGGCTTGTCAGTCCTTCCATGACTACATTCCTTCCACCGGGATTGTTGAACGGCGGCGAGTCTGTGTGA

Transcript

jg39372.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q3UHK8	Trinucleotide repeat-containing gene 6A protein OS=Mus musculus OX=10090 GN=Tnrc6a PE=1 SV=2
Q9HCJ0	Trinucleotide repeat-containing gene 6C protein OS=Homo sapiens OX=9606 GN=TNRC6C PE=1 SV=4
Q8NDV7	Trinucleotide repeat-containing gene 6A protein OS=Homo sapiens OX=9606 GN=TNRC6A PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF00226	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001623	Domain	DnaJ domain	Interproscan
IPR041917	Domain	Trinucleotide repeat-containing gene 6C protein, UBA domain	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR052068	Family	GW182 domain-containing protein	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0035195	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18412	TNRC6, GW182; trinucleotide repeat-containing gene 6 protein	-	Chromosome and associated proteins	ko03036	deepkoala