Detailed information of jg47134.t1 in Edwardsia elegans

Genomic Location: ctg_0015:540981...544851
NR annotation: XP_001624605.1, E3 ubiquitin-protein ligase RNF113A [Nematostella vectensis]
Species Edwardsia elegans · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q67ER4E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1
O15541E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1
Q8IZP6RING finger protein 113B OS=Homo sapiens OX=9606 GN=RNF113B PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008223 (this species only)
Transcription factor familyzf-CCCH · all TF in this species
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00642
all species →		zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF13445
all species →		zf-RING_UBOXRING-type zinc-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan
IPR027370
all species →		DomainZinc finger, RING-type, eukaryoticInterproscan
IPR036855
all species →		Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR039971
all species →		FamilyPre-mRNA-splicing factor CWC24-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12930
all species →		ZINC FINGER PROTEIN 183Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0005684
all species →		Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0034247
all species →		Biological ProcesssnoRNA splicingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13127RNF113A, CWC24; RING finger protein 113A-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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