Genomic Location: ctg_0370:9043...24440
NR annotation: XP_032218666.1, uncharacterized protein LOC5518205 isoform X1 [Nematostella vectensis]
Species Edwardsia elegans · all data for this species · gene families
| CDS |
| jg5413.t2 |
| Transcript |
| jg5413.t2 |
| Protein |
| jg5413.t2 |
| UniProt accession | Description |
|---|---|
| O46043 | Poly(ADP-ribose) glycohydrolase OS=Drosophila melanogaster OX=7227 GN=Parg PE=1 SV=3 |
| Q8VYA1 | Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=PARG2 PE=2 SV=1 |
| Q9QYM2 | Poly(ADP-ribose) glycohydrolase OS=Rattus norvegicus OX=10116 GN=Parg PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001971 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05716 all species → | AKAP_110 | A-kinase anchor protein 110 kDa (AKAP 110) | Family | Interproscan |
| PF20811 all species → | PARG_cat_N | Poly (ADP-ribose) glycohydrolase (PARG), helical domain | Domain | Interproscan |
| PF05028 all species → | PARG_cat_C | Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018292 all species → | Domain | A-kinase anchor 110kDa, C-terminal | Interproscan |
| IPR048362 all species → | Domain | Poly (ADP-ribose) glycohydrolase, helical domain | Interproscan |
| IPR046372 all species → | Domain | Poly (ADP-ribose) glycohydrolase (PARG), catalytic domain | Interproscan |
| IPR007724 all species → | Family | Poly(ADP-ribose) glycohydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12837 all species → | POLY ADP-RIBOSE GLYCOHYDROLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004649 all species → | Molecular Function | poly(ADP-ribose) glycohydrolase activity | Interproscan |
| GO:0006282 all species → | Biological Process | regulation of DNA repair | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0009225 all species → | Biological Process | nucleotide-sugar metabolic process | Interproscan |
| GO:1990966 all species → | Biological Process | ATP generation from poly-ADP-D-ribose | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07759 | PARG; poly(ADP-ribose) glycohydrolase | EC:3.2.1.143 | Base excision repair | ko03410 | deepkoala |
Genes whose expression across the transcriptome samples of Edwardsia elegans tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Edwardsia elegans, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
