Gene detail

Detailed information of jg7259.t2 in Edwardsia elegans

Genomic Location: ctg_0853:105773...127245
NR annotation: XP_032229700.2, uncharacterized protein LOC5505409 [Nematostella vectensis]
Species Edwardsia elegans · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

jg7259.t2

ATGGGTCGATTACGTAATAAGAAATACTGGTGTGCGGCGGCCAAAAACAAGAATGAGTATCTACAGATCGACTTAGGAGCTgAAAAGACCATATCTTCACTTGACGTTCAAGGGCGTGGGAACTGGTACGATTGGGTCCGAGCCTTTTTTCTGTACTACAGTGATGATGGTCAGCGGTGGACTCCATACACCGAGCGGGGACTGCATTCTAATTTCAAGGACCTTTGGGGATCAAAGGCTAATAACGCGGCGAAGGCTTGTTATGACAAATTGAATACCGAAGCGCAAGGCTACGGGACATGTGACGCAGCTAAGAACACCTCTTGTACTGCCGAGAATGTGATGTGTGGCCAGATCCAGTGTGCAAACGACGGAAGCACACCCGTTGTCAAATACGGCAAGAGTTATAAGAAATTCACGCTGACTGGTGGGGAAACATGCAGCGGTGCAGTGTTGAGTAGTTCAGACACTCTTGGTCGAGGCATGGTAGCCGATGGAACGAATGGAGACAACAAGATGTGTGTCAAGGCGGAGTGCAAGGCATATGCTGATCTCGGCATCGGCTCGTGTCCCTTGGTAGATGGTCAAGAATGCGCGGGAAGAGGGATTTGCACTAACGAGAAAGTGTGCTTCTGTGATGCTGGCTATGATCCTAAGACTGCCTGCAAAACAACTCTCACACCACGCGATGGAGGGTTCGGCGCATGGGCAGAGTGGTCCGAGTGTAGCCGAGGGTGTGACGGCGGCAAGCGAACACGACACCGCTTCTGTAACAATCCGTTCCCAGCACATGGGGGTCAGGACTGTGTTGGAGACCTACAGCAGGAGGAAGTCTGCCAGGCGCAATCCTGTCCAGTCGCTCGCTCATGTCGCCACCTGCAGCAAATCGCCACCGAATTTAAACTGAGTCTTGGGGATGGAGTGTACAAGATTTACCCACAAGGCCAATCGAACCCAATAATGACTCTGGAAAACGACTTCTCCATTCTCAAACACGCTGATAGCATCAAGGATAACATCAACATCGTCGGAGAGACGTTTGAATATCGATTGGAGGCACAAAGTCGAGGTCGTTGGGGTGGTATATGGCGAGCGGGCAGAAGCTACACATTCACAGCCACGAATAACGGACAAACTAATGTGCAACTGGTGAAGAAGTTTGACAACTGGAACTATCATAACAATGCGATCGAAAAACGCATGCCTTGGATTTCCAGCGCACGCCTGACTACATCACAGAACCCTACAAGTGGATGGTGGGGAACCATCACGGGCGATGAAAAAGGCTACCACCCAGCGCCTTGGATCAGTGGTCATCTGATGGAGTCCCAACCGGAGCACATTTGGTACTGGATGAAGGAGGGTCCCATGGTGCTGCCCCGATCATGTATGGAAGTACAGATGAGAGGGCTCCAGACTACACCAGTATCTAACGGTATTTTCACCATCAAGCCTCCAGGCAGCATTGAAGTAAAGACGTACTGTGACGTCACCAGTCACGGCGGCGGCTGGACACTCGTGGCGACTAGTAAGACGCACTCCGGTTGGTCAGCGGACAATGTtaaacacaggaatcccgacaCTCCGTCACTTGATGCTGACTACTCCATACTGGGCTATGCTGATGCTATCAAAGACTTTGACAACTCGCAGGATTTCTTCCAGTACAGAATCGAGGCGGACGGAGATAATAAGTATGGCGGAATCTGGAACGCGCCTCAAAGTTATACATTCACCTCCAACTGCGACAAGCAAACAGACGTGAAGCTCGTCAAATCATTTGATAACCTGCCAGCAGACAGCAACCTTGCTAAACTGATGCCACGTCTCGAGCTGTCACCTGCAGACAATCCAGATATACTGCTGACCAGCGCGACAAGCGTCGACGATTCATCAGGGTCGCTGATATACAACGGGAACTCTGCCTCCTACCTACCGGGTGTCAAAGAGAAACCGGGGGTGGTCCGGTACTGGATGAGAGAGGGGACTAGGCGTTCCTGTAACGACATCAAACTTCACGGCGTTCGCAGTGGACGTAAATACGAGGACGGATTCTACATGATTAGTCTGCTAGGCCCGTCCCAGTACCTCCCGGTCTACTGTGACATGACGTCAGAACCTGGCGCCTTTACCCTCCTCGTCACCAGTCGACACAACAACTGGACTAGGGCCCAGGTCCCCGCAAGAAACGTGTTCAGCCCGTCTCTGAGTGGCGACTACTCCATCCTGAAGTACGGAAACATGATCAAGAATCTTGGCAAGAACGACACGTTCGAATACAAGCTGGAAGCGAACCAGAGAGGGCACTGGGGAGGAGTATGGACAGCGCCACAATCATATTCTTTTATGGCAACTTATGCTGGACAGACATCAGTGACTTTGGTACTTCCACCTCTGCCATCCGGGTCCATCTTATGGGGCGATACGCAATATCGTCCGGCCTATTGGGTCACATACGGTGGTATGACCAACCCCGGCACCATATGGTATTGGGTTAATGAAGACGACTGTGACAGCAACAGACAACCCGTGCATGCTGGCCTTTCTGCATGGAGCGAGTGGGACAAGTGTGACACACTTTGCGCGAATGGCACACAAAAACGCGTCCGATACTGCACCAACCCGAAGCCGAGATGTGGAGGGAACGACTGTAGAGCCTTGGGGGACACCGTCGAAACACGACCTTGCTACTCGTGTGATGAGAGTCCTATCAGGAGTTACGGTGGTTACTGCATCCAGCCTCAGAATGCAAGCTGCACTCCAGCGGACAACAACAGGCTGATCTTCAAGAAAGCCGACGCCGAATGCAGCAAACCCTACATGAACTTCGTGATCGATATGGACGGTGTCATTCATCACAAATGCAGCGGGAAGATCGTCTGTCCTGACGGAAACTGGCCTGGCCAAGGCCACAAGCTTGTATTGAAGACAACTTGCCCACTGGATATCTCCAAATTTAGGCGTCTTGCGTCCAAGTCTCTCCAAATCACAAAGAACAGCAAATGTGTCCACCCTAATGGCGGCTGGCCGGGCGAGAATAGGAATCTTGTCCCTGCGACGCTGCAACTAACCCTGGACTTCTTCAGCTCAGTGAATCACCTCATCCGGTTTGGAAGTGAAAGGAGTACGGGTGGATTACAGCAGGAAACTTGTGATAGAGGTCTTGGACTAGTGAGAAATGGACTCTTCATCAGCATGGAGAGTTGGCTTGATCTTGTCGGCGATATGTGTTTACTACCATGCAGAAGGTAA

Transcript

jg7259.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWZ3	Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q8WWU7	Intelectin-2 OS=Homo sapiens OX=9606 GN=ITLN2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000540 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08516 all species →	ADAM_CR	ADAM cysteine-rich	Family	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006586 all species →	Domain	ADAM, cysteine-rich domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906 all species →	PROPERDIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for jg7259.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for jg7259.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.