Genomic Location: ctg_5023:5253...7631
NR annotation: XP_048580989.1, adhesion G-protein coupled receptor V1 isoform X3 [Nematostella vectensis]
Species Edwardsia elegans · all data for this species · gene families
| CDS |
| jg804.t1 |
| Transcript |
| jg804.t1 |
| Protein |
| jg804.t1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006247 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03160 all species → | Calx-beta | Calx-beta domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003644 all species → | Domain | Na-Ca exchanger/integrin-beta4 | Interproscan |
| IPR038081 all species → | Homologous_superfamily | CalX-like domain superfamily | Interproscan |
| IPR051171 all species → | Family | Calcium/Cation Antiporter | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11878 all species → | SODIUM/CALCIUM EXCHANGER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007154 all species → | Biological Process | cell communication | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005432 all species → | Molecular Function | calcium:sodium antiporter activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0015491 all species → | Molecular Function | obsolete cation:cation antiporter activity | Interproscan |
| GO:0030001 all species → | Biological Process | metal ion transport | Interproscan |
| GO:0030424 all species → | Cellular Component | axon | Interproscan |
| GO:0035725 all species → | Biological Process | sodium ion transmembrane transport | Interproscan |
| GO:0042383 all species → | Cellular Component | sarcolemma | Interproscan |
| GO:0098703 all species → | Biological Process | calcium ion import across plasma membrane | Interproscan |
| GO:0098794 all species → | Cellular Component | postsynapse | Interproscan |
jg804.t1.Genes whose expression across the transcriptome samples of Edwardsia elegans tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Edwardsia elegans, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |