Detailed information of pspe_0.1.m1.12412.m1 in Pachyseris speciosa

Genomic Location: Sc0000037:1588445...1657642
NR annotation: XP_044184844.1, helicase with zinc finger domain 2-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9BYK83'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7
P42694Probable helicase with zinc finger domain OS=Homo sapiens OX=9606 GN=HELZ PE=1 SV=2
Q6DFV5Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00773RNBRNB domainDomainInterproscan
PF13087AAA_12AAA domainDomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF13086AAA_11AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003593DomainAAA+ ATPase domainInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR001900DomainRibonuclease II/RInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR045055FamilyDNA2/NAM7-like helicaseInterproscan
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10887DNA2/NAM7 HELICASE FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004540Molecular FunctionRNA nuclease activityInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K25165HELZ2; 3'-5' exoribonuclease HELZ2EC:3.1.13.1
EC:5.6.2.6
Messenger RNA biogenesisko03019deepkoala

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