Gene detail

Detailed information of pspe_0.1.m1.12672.m1 in Pachyseris speciosa

Genomic Location: Sc0000039:1525890...1538310
NR annotation: DAC81285.1, TPA_asm: acintoc8 [Corynactis coral adintovirus]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.12672.m1

atgactacttatcatcctcatggagtaagactttcaaacagtcagaagcaaaggcttgcaaaagctatacaaacaaattcaccggtaacattgagactcgcacatggagatctcactggaggtgatcaaatgatgttgacaaaaacacagataaaaaaattagccaaatcacagagaaatggaacaggtgctgatgtaaagatatccaaagcacagatcagaaaatcagtccaagaaggaggttctctttggtccagtcttttttcacttggaacaagactattgccttatgcagctataggcgatgactcattcctgttttccgagaatgtcacgcttgGTATCATAGAGAAAAAACGTAGTGAGAAAAGTATTGTGCAGAGGCAAGAGGCACCAGGCGTCATTGGAGCATTCGCAAGACACTTCAGGACACATACGGGAGAAAAACCGTTTAAGAGTGATTACTGTGACAAGCAGTTCAGTGATTCAAGGAATCGGCGACGTCATGAGAAGACAGACACCGAAGCGTTAACGAAGAGTACTCAACATAATGAGCGAGTCAGTAGAGAAGAAGATCAACAGAAGGAAGTCCGAAAGGGGAAGAAAAGATTTGAAGGAATCCGCTCAAAAAAGGTGCCTATTCCGTGTGAACACTGTGGAAAACGCTTTCCCGATCAGTATAGATTAAACAGACATAACAGGACACATACAGGAGAAAAACCGTTCAAGTGTGAACACTGTGACAAGTGGTTCAGTGACTCGGGATCGCGGCGACGTCATGAGAAGACACATACCAAAAGAATGTCCTTGAACAATCATCAGCATAATGCGCGAGTCAATGGAGCAGAAAATCACCAGGAGAAGATGctaaaagagaagaaaaagttCGAGGGAAACTGCTCAAAAAAGCGACCTTTTCAGTGTGAACATTGTGGAAAATGCTTTACCAGGCCGTGTGATCTAATTAGACATACAAGGACACATACGGGAGAAAAACCGTTTAAGTGTGAACACTGCGACAAGCGCTTCAGTGATTCAGGGAATCGGCGACAACATGAGAGGACACACACCAAAGGGTCAGCGAAGAATAACCAGCACAATGAGCAAGTCAGCAGAGTCGAAGGGCAACAGAAGAAAATCCGAAAGGGGGAGAAAAGAGTTAAAGGACGTTGTTCAAAAGCCCGAGGTTTTCAGTGTGAACACTGTAGAAGGTGTTTGTCCAGTCAGTCTAGTTTAAATAGACATAAGGGGACACACATGGGAGAACAACCGTTCAAGTGTGAACACTGTGACAAGTGGTTCAGTGACTCGGGATCTCGGCGACGTCATGAGAAGACACATACCAAAAGAATGTCCTTGAACAATCATCAGCACAATGCGCGAGTCAATGGAGCAGAAAATCACCAGGAGAAGATGctaaaagagaagaaaaaggtCGAGGGAAACTGCTCAAAAAAGCGACCTTTTCAGTGTGAACATTGTGGAAAATGCTTTACCAGGCCATATGATCTAATTAGACATACAAGGACACATACAGGAGAAAAACCGTTCAAGTGTGAACACTGTGACAAGCGGTTCAGTGATTCATGGAATCGGCGACGTCATGAGAAGACACACACCGAAGCGTTAACGAAGAGTACTCAACATAATGAGCGAGTCAGTAGAGAAGAAGATCAACAGAAGGAAGTCCGAAAGGGGAAGAAAAGATTTGAAGGAATCCGCTCAAAAAAGCTGCCTATTCCGTGTGAACACTGTGGAAAACGCTTTCCCGATCAGTATAGATTAAACAGACATAACAGGACACATACAGGAGAAAAACCGTTTAAGTGTGAACACTGCGACAAGCGGTTTAGTGATTCAGGGAATCGGCGACAACATGAGAGGACACACACCAAAGGGTCAGCGAAGAATAACCAGCACAATGAGCAAGTCAGCAGAGTCGAAGGGCAACAGAAGAAAATCCGAAAGGGGGAGAAAAGAGTTAAAGGACGTTCAAAAGCCCGAGGTTTTCAGTGTGAACACTGTAGAAGGTGTTTGTCCAGTCAGTCTAGTTTAAATAGACATAAGAGGACACACATGGGAGAACAACCGTTCAAGTGTGAACACTGTGACAAGTGGTTCAGTGACTCGGGATCTCGGCGACGTCATGAGAAGACACATACCAAAAGAATGTCCTTGAACAATCATCAGCACAATGCGCGAGTCAATGGAGCAGAAAATCACCAGGAGAAGATGctaaaagagaagaaaaaggtCGAGGGAAACTGCTCAAAAAAGCGACCTTTTCAGTGTGAACATTGTGGAAAATGCTTTACCAAGCCATATGATCTAATTAGACATACAAAGACACATACAGGAGAAAAACCGTTTAAGTGTGAACACTGTGACAAGCGGTTCAGTGACTTGGGAAATAGACGGAGGCACGAGCGGAGTCATTCAAGGGCGTTGTTAGTCGAGAAACAGAAACCGAGGCGGGTAACACACGCATGCTGGATATGTGCAGAAGAGTTTCGCAGTGAGGTGGCACTTCTAAGGCACTACGATGATCATATGTTGGATTTATGCGATCTAGAACATTAG

Transcript

pspe_0.1.m1.12672.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR050758	Family	Zinc finger protein, C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23234	ZNF44 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala