Gene detail

Detailed information of pspe_0.1.m1.12794.m1 in Pachyseris speciosa

Genomic Location: Sc0000040:1595107...1605825
NR annotation: XP_027036940.1, transmembrane protein 41B-like isoform X1 [Pocillopora damicornis]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U4K5	Transmembrane protein 41B OS=Xenopus laevis OX=8355 GN=tmem41b PE=2 SV=1
A1A5V7	Transmembrane protein 41B OS=Danio rerio OX=7955 GN=tmem41b PE=2 SV=1
A4II98	Transmembrane protein 41B OS=Xenopus tropicalis OX=8364 GN=tmem41b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002179 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09335 all species →	SNARE_assoc	SNARE associated Golgi protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045014 all species →	Family	Transmembrane protein 41A/B	Interproscan
IPR032816 all species →	Domain	VTT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43220 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27310	TMEM41; transmembrane protein 41	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.