Gene detail

Detailed information of pspe_0.1.m1.13368.m1 in Pachyseris speciosa

Genomic Location: Sc0000045:614260...630888
NR annotation: XP_044178220.1, D-inositol 3-phosphate glycosyltransferase-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.13368.m1

ATGGCCGCGAACGCGGACGAGCAGGTTCTTCGCCCACCTGCTGCAGAACAGGTTGCTTTGGCTGTAGCTGAGGCGGCTGGTAATCAGCCTGAACAGCCCGAGGGTCAAAGTCCGGCCCAACAAGTTGTCAATGCTCCAAATGATGTTTACCCTAAAAGACAGTGTGTTGACAAATGTGCGCATTTTCTTTCCACAGGCGTTGAACACTATGACTTGAGAATCCGGTTTATGTTGGTCTTGACAGCATGCTTGATTATGGCTTCCAGCTCACGGGAATCTCAACAACGTCAAAAAGCTTATGAATCTAGTAAAGTTAAGATCACCATTTTGGCTTCTGAATGGGAATCAAGCAAGGGAGGACTTTCCACAGTAAACAGAGAATTAGCAATTCAGTTGGCCAAGTCCCCCAACGTGGAAGTTATATTTTTTCTACCGAAATGTAGTGAAGAAGAGAAGAAAGCTGCCTTTATCCACAATGTACACATTCTGGAGGCCAAACGACGGCCTTGTTATGAAGAACTGGAATGGTTGAGCTTTCCACCAGAACATTTGCATATAGACATAATTGTTGGCCACGGGGTGAAACTCGGTCGGCAGGCGCAAATTATCAGAGAATCTCACAAATGCAAGTGGGTGCAAGTTGTCCACACAGACCCAGAGGAAATGGGAATGTTCAAGGTTTACACGAATCCTATTTCAATGGGCGAAAAAAAGCACAACCTTGAACTAGAACTGTGTGAAATATCTGACTTTGTTGTAGGAGTTGGCCCCAAGTTAAGTGAGTCCTTTCGCGCATACCTTCGCTGGTGTGAAAAAGATCAGAGTGTATTTGAGTTAACACCAGGTCTGTTTGAGGAATTTATGAATATTAAACAAGTCCCCGAAGAAAGAAAATATCGTAGTGTTTTAGTGTTTGGCCGCGGAGATGCAGAGGATTTTGAATTAAAAGGGTTCGACATCGCCGCAAGGGCTGTTGCGTCACTACCTGACACTCACCTTATTTTCTTTGGTGCACCCGATGGAAATCATCAGGAAATAGCGAAACTCTTCCTTCCTTGTGGTGTTCCCCGTAATCGTCTGAGGGTAAGAAGCTTCGACAAAAGCCGAGAAAGTTTGAAGCGATTATTTTGCGAAGTAGATCTTGTATTGATGCCTTCAAGAACAGAGGGTTTTGGGTTGACCGGTCTTGAAGCTCTGTCAGCTGGTCTTCCCATACTGGTTAGCAAGAACTCTGGGTTAGCAGAGGCCTTAAGCAAATTACCACCTGGTCCATCATTTGTGATTGACTCAGAAGATCCCAAGATATGGGCTGCAGCCATCAAGAACGCCTTGAAGAAAGACAGGCAAAGTCGACTGGAGGAGGCTGAAGCTTTGCGCGCATCCTATGAAAGGGAATACAGATGGGACAAACAAATGGAAGCCCTTTTATCGAAGATGATCAACCTTGTAACAGCACCTCAAAGCTTGTCATGCTTGGAGATAGTACACCAAACAAAACCAAGCCTTTCTATCGCTGACGGCCAAGGTCTGACTGAAGCAGTTGCTGGATGTGAAGCGCAGTTCAAGGTGACGACAAAAGACGCTGACGGAAGACAGTGTTACAGTGAGCGAGATCGATTGACGGTGGAGATCCAAGACGAACCAAGGCGAGCACGCAAGACAGAGGTGGAAAtaaatgacaacaacaacggaCAGTATCAGATCCGCTACTGTCCCAGAGATCAAGGCAGATATTCAGTTATCATTAAGATAAACGGGGAACATGTTCATGGTAGTCCCTATAATTTGCAGGTGAAAGCTGCCGGCAAGGTTGTCTGCTCTGGGAATCTTTCTGTCCGGGGAGGAAATAGCGGGGAGTACTCTCCTTCTCCGAGTGCCTCTCGCTCTTTTTCACCGGAGCAGGGAGCTTGCTCGCAAGTTGTATCAGGAAAATCATTCAATTTCCAACTTGTCTCATGTTTTGGAAAGAAAGGATCTTCCGTGGGAATGTTTAACAGTCCTTGGGGGGTGGCAGTGAATGACATGGATGAGATAGCAGTAACTGACAGTCTTAACCACAGGGTGCAAATCTTTGACAGTAGTGGAGAATTCTTAAGATCGTTTGGTCATCGCGGTACCAATCCGGGGATGTTCAGTAACCCTCGTGGAATATGCTTTCATAAGAATGGGAAAATTTTTGTAGCAGACAATGGTAATGACAGAATTCAGATTTTTAACCGGGAGGGTAGGTACATGGGTGGGTTTGGAAACCTTTCTAATCCCAAAGGTTTATCATTGGATGCCAATAGTAATATTATAGTGGTTGATAGCGGCGATAAACTGATTAAGACCTTTACACCTGATGGTAAGTTGGTAAGGAAGATAGGTGGGCCTGGTTCTTTTAGTTATCCTATCGACTGTGTTCAGTGTGACGGATATTTCATTGTGTCAGATGGAGGTGAACACTGCATTAAAGTGTTCGATGGGGAGGGGAAATTTCAGTTTAAATTCGGTCagaaggggggaggggatggTGAGTTTAATTCCCCCCGTTGTTTGTTGGTGACAAAATCGAAACAGCTGATGGTTTGTGATTTCAATAATCATAGACTTCAAGTGTTTCAACTGAATGGTCGGTTTATTGGCAAATTTGGAACGAAAGTCAGTAACTTAGGAGAATTTATTTGCCCAACGTCTGTAGCTGTTTTAAGTAATGGTAGAATTGTTGTGGCTGATTGCGGTAACCATTGCATTCAAATAtttgaatga

Transcript

pspe_0.1.m1.13368.m1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF20706	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00142	AASDH; acyl-CoA synthetase	EC:6.2.1.-	Lipid biosynthesis proteins	ko01004	deepkoala