Gene detail

Detailed information of pspe_0.1.m1.13460.m1 in Pachyseris speciosa

Genomic Location: Sc0000046:505195...530710
NR annotation: CAH3036918.1, unnamed protein product [Porites lobata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.13460.m1

ATGGCGGATTATTCAAGCGACCCTGCTACTATAGTAAAACAGGCCAGACTATTACAAGAACCAGACTTCAAAGAATTCTGCACCAAAGTTCTGGGAATTTTGCGAAGTCGTGAACGAGGATCAGAGTGTACGAACGTGTTGAGGCGACTGTTTTTGCTGTTAGCAGCTACCAGACAAAGAAGAAgTCAGCTTGTCATTGCTAATGTGGATCCACCTGTTGAACAGAAGTGGATTCCAATAATCTTACCTCTGGCATGGATGCAAGGCCAGGAGAAAGGTTGCTGGTCAATACATGTGCCACAACTTGTACAATGGTTAACCAAACCTGGGGTGCCTGTGGAGCTACAGACGATGTCTCTTGGATCTTTGCAGTTGTTAATTCACATTGATGACAGTGTGATATCACAAGATGATGCTGGTGGAGTGAGTCGTCAGATGGCCAACTGGTTAAAAAATGCCAGCACTGTATCTGCACCCAACCCTAACCAGAGACAGATATTGAGAGGAGGCAAAGCTAAAGGGTACCAGTTGGTTACTGAGATTGATGGAACATCATCAAGATATTTCTTTACAGTTTTAAGTATTGCCCAGTACTTTTTTCCCGACCAAGTTTTAAACATCCACAGCTTTTCTATGCTCCGATCTTGGCTCCACCACTTCACATTTGCCAGCTCAACTGCACCTTCACCAAGAAGTGGCCATTCACCTCTGATTTCTGCAACTGCATCCCAGTCAGGCTCAGTTGAGAACCTAAGTCAGTCCATTCACTTTTCAGAATCCCCTTCCGGACACCGCACCCTCAATCAAAGCCAGTCAAGCATGGATAATATCTCCATTGGCTCCGAGTCTTCTATAGGCTTTATCATCCCTTTGTCACGCTCATCTCCACTGGAAACTGGTGACCATTCTGTTTCCCAGTCCCCCACTCTTGGACAATTGTCTGATAAAGCTGATAAGGACTCGCTATCAAATGACAGTGGCTCTAGGCCCCAGACTCCTTTGAGCTTTCCTCTTGATGCTGAGGAGATCAGCACAAAGGGCCAACCACATGCTGCAGCTAAGCAAATGAGACATCAGAGAAGTCATTCCATGTTAAGTTTCTCCAAACTATTTCCTTCAAGTCTGCATGGTGCAAAAACAGGGGAACAAGAGTTGAAGGAGAGATCATGTGAATATTGCCTCAGGCTGCTGGAACAAAGTGAAAGAAAACCAAGCAAACAACAAGATGCCATCTTGATTGAGGCATGTCTTGTGGAGGCCATCTACATTCTGGACACCCTCTGCTCCACGGACAAATCTTTGATTCCCAAGCTGATTGAGATTATCAGAAGACTCTATGCTCGAGTCACTTCAGACATAAGTAAGTGGAAACGAGTGCTGATTCCCGTGGTGCAGTTTCTTCTCAATCATGGTGAAACAGTTGTATTTGATCCTGAACCTGCCTGCAAAACTCTGCTTGGTCCTGTGCTAAGTTCATATTATTCTAATTCTTCCCTTgcatttgaaattgttttcttttgcctGGAAAACTTGGAAAAACTCTGCTTTTCAACTAGCATTCTTTCAAAGTACTTCCCAAATTTATTAAAGATTCTGGCATGGTATCCACGAACTTATGTCAAGGAATTTATGGACATGTTACCTGCCATGTTAAACAACGATACTGTAGTGGAGATGTTTCACGCTCTGCTTGATCTGCCTTGCCTGGCAGCTGCATTGTGTACTTCATGGGCTGTCAAAGTAAAAGCCAACAGTGGAGACAAGATTACATTCGGTCAACAATCGTCTGCAGACACTTTTCTGGTGCCTGACTACAGACCTCTGTACAGCTTCATTCTGAGGCCTGAGGCTGGACATGGAGACACCATAGACAAacTTGCAACTCTTCATTTGTTGTTAGAGGACAGACTGGAACTGCCTCGTGTTGTTGTCTCTGCACAAATTGCTCCGGTGCTGTTAAATGTGATGTTTGCCACTGTTCTGGACGAGGCTGACGAGGAGACGATCAGTCGCTTGGTGCCCGTAATACTGGAGAGAGTTGGACTGTTGTACCCAGTGCAAAGCTACCAGCAGGAGATTCACGAGTTGTTATCAGAGAGGTTGGTACAGCTGTGTCAGAAATACCCGAACCTGGTCATCCGATATCAACAGGATATTATGGACTTTGTTAGTGGACTGAAAAACCTTGGTCCGgccaaagaaaacttttttGTTCACTTGGTGTGGGTGATAGGAGAGTTTGCTTCATCTGCGCATGACAGTAGATGCACTGTTCAAAACATTGTGCAGTATTATGAGGCATTTGAAGCTTTAACCTACGAAGTAGTGATGCAGACTTCACCAGGGAAGGTCTCGTTTAGTGGAAGACTTGTTTCGGTTCTTATCACAACCTTGGCAAAGCTTGCCTCAAGATGCCAGGATGTGATTCAAAGAGCCATTCTATGTTTGAGTAAAGTTGTGCGGCAGAAACCGGAGCTTCTCTGTGACCCAGAGTGTTATCCTGATCTGCTAATACGAGCTCAGGAATTAATCAACCTTCTTAAACTACCGAACGTGGCGCCTGTGATACTGAGTCCGGATCCTGAAGTTTATAGCGGAAGATGGCACAGGGATACCAACTCGTCTTTACCGCTGTTGCTTCGCACATGCGACACAATCCTTGCTTCATAG

Transcript

pspe_0.1.m1.13460.m1

AGCGGAGCCTTGTGACATTTTGAGTGTGTTACATAAAGCAAAACCGATCAAAATATGGCGGATTATTCAAGCGACCCTGCTACTATAGTAAAACAGGCCAGACTATTACAAGAACCAGACTTCAAAGAATTCTGCACCAAAGTTCTGGGAATTTTGCGAAGTCGTGAACGAGGATCAGAGTGTACGAACGTGTTGAGGCGACTGTTTTTGCTGTTAGCAGCTACCAGACAAAGAAGAAgTCAGCTTGTCATTGCTAATGTGGATCCACCTGTTGAACAGAAGTGGATTCCAATAATCTTACCTCTGGCATGGATGCAAGGCCAGGAGAAAGGTTGCTGGTCAATACATGTGCCACAACTTGTACAATGGTTAACCAAACCTGGGGTGCCTGTGGAGCTACAGACGATGTCTCTTGGATCTTTGCAGTTGTTAATTCACATTGATGACAGTGTGATATCACAAGATGATGCTGGTGGAGTGAGTCGTCAGATGGCCAACTGGTTAAAAAATGCCAGCACTGTATCTGCACCCAACCCTAACCAGAGACAGATATTGAGAGGAGGCAAAGCTAAAGGGTACCAGTTGGTTACTGAGATTGATGGAACATCATCAAGATATTTCTTTACAGTTTTAAGTATTGCCCAGTACTTTTTTCCCGACCAAGTTTTAAACATCCACAGCTTTTCTATGCTCCGATCTTGGCTCCACCACTTCACATTTGCCAGCTCAACTGCACCTTCACCAAGAAGTGGCCATTCACCTCTGATTTCTGCAACTGCATCCCAGTCAGGCTCAGTTGAGAACCTAAGTCAGTCCATTCACTTTTCAGAATCCCCTTCCGGACACCGCACCCTCAATCAAAGCCAGTCAAGCATGGATAATATCTCCATTGGCTCCGAGTCTTCTATAGGCTTTATCATCCCTTTGTCACGCTCATCTCCACTGGAAACTGGTGACCATTCTGTTTCCCAGTCCCCCACTCTTGGACAATTGTCTGATAAAGCTGATAAGGACTCGCTATCAAATGACAGTGGCTCTAGGCCCCAGACTCCTTTGAGCTTTCCTCTTGATGCTGAGGAGATCAGCACAAAGGGCCAACCACATGCTGCAGCTAAGCAAATGAGACATCAGAGAAGTCATTCCATGTTAAGTTTCTCCAAACTATTTCCTTCAAGTCTGCATGGTGCAAAAACAGGGGAACAAGAGTTGAAGGAGAGATCATGTGAATATTGCCTCAGGCTGCTGGAACAAAGTGAAAGAAAACCAAGCAAACAACAAGATGCCATCTTGATTGAGGCATGTCTTGTGGAGGCCATCTACATTCTGGACACCCTCTGCTCCACGGACAAATCTTTGATTCCCAAGCTGATTGAGATTATCAGAAGACTCTATGCTCGAGTCACTTCAGACATAAGTAAGTGGAAACGAGTGCTGATTCCCGTGGTGCAGTTTCTTCTCAATCATGGTGAAACAGTTGTATTTGATCCTGAACCTGCCTGCAAAACTCTGCTTGGTCCTGTGCTAAGTTCATATTATTCTAATTCTTCCCTTgcatttgaaattgttttcttttgcctGGAAAACTTGGAAAAACTCTGCTTTTCAACTAGCATTCTTTCAAAGTACTTCCCAAATTTATTAAAGATTCTGGCATGGTATCCACGAACTTATGTCAAGGAATTTATGGACATGTTACCTGCCATGTTAAACAACGATACTGTAGTGGAGATGTTTCACGCTCTGCTTGATCTGCCTTGCCTGGCAGCTGCATTGTGTACTTCATGGGCTGTCAAAGTAAAAGCCAACAGTGGAGACAAGATTACATTCGGTCAACAATCGTCTGCAGACACTTTTCTGGTGCCTGACTACAGACCTCTGTACAGCTTCATTCTGAGGCCTGAGGCTGGACATGGAGACACCATAGACAAacTTGCAACTCTTCATTTGTTGTTAGAGGACAGACTGGAACTGCCTCGTGTTGTTGTCTCTGCACAAATTGCTCCGGTGCTGTTAAATGTGATGTTTGCCACTGTTCTGGACGAGGCTGACGAGGAGACGATCAGTCGCTTGGTGCCCGTAATACTGGAGAGAGTTGGACTGTTGTACCCAGTGCAAAGCTACCAGCAGGAGATTCACGAGTTGTTATCAGAGAGGTTGGTACAGCTGTGTCAGAAATACCCGAACCTGGTCATCCGATATCAACAGGATATTATGGACTTTGTTAGTGGACTGAAAAACCTTGGTCCGgccaaagaaaacttttttGTTCACTTGGTGTGGGTGATAGGAGAGTTTGCTTCATCTGCGCATGACAGTAGATGCACTGTTCAAAACATTGTGCAGTATTATGAGGCATTTGAAGCTTTAACCTACGAAGTAGTGATGCAGACTTCACCAGGGAAGGTCTCGTTTAGTGGAAGACTTGTTTCGGTTCTTATCACAACCTTGGCAAAGCTTGCCTCAAGATGCCAGGATGTGATTCAAAGAGCCATTCTATGTTTGAGTAAAGTTGTGCGGCAGAAACCGGAGCTTCTCTGTGACCCAGAGTGTTATCCTGATCTGCTAATACGAGCTCAGGAATTAATCAACCTTCTTAAACTACCGAACGTGGCGCCTGTGATACTGAGTCCGGATCCTGAAGTTTATAGCGGAAGATGGCACAGGGATACCAACTCGTCTTTACCGCTGTTGCTTCGCACATGCGACACAATCCTTGCTTCATAGCACAGGACTATTGTGGATCTTATCCTGCATTACGCTGAAGCTTCCTGCCTCGCCCCCATGAAAGAGGCAGCGTGGGACGAGTGGCACCCACAATTCCCAGCGCAGTCCGCGTGACCATCTTCAACACAGCCATTTGCCCAAACTATAGAGTTTGCAGTCAAGTAGAAAATGGTAAAAATCATAAACAAAAGAGAGGTGTGGTATTCAGGGTTTACATGTTTAGCGAAGTGATCCAACAATCTTCACCAAGACACTGAATGCCACGGAATTTGCAGTTTGTGTATGAGACCTGAGAAAGTCAGGGTATTAAGAAAAATTGGTCTGATTCATTATATAAAGTCTTGGGATTCCAGTAAGCTGGTGATTGAAAAACTTACCAAGTTGAAACGAAAATACTACTTTTGTATGTTATAGTCTCAACTGTGACTTCGTGCTTCAAAAAACTTTGACAGAGTCGAGGGATATCGAAAGGGTTAAAAATTGACATTGGCTTTAAAACTACATCGGGACATTCGGTTGCTGCTGTAGCCTTCTTCAGATAAGATAGTAAATGACTAAAGGCTTCCCAGGTGTTATGTGAATAAAAAATAGACGAGAATGTGATAATGAATGTTTTAAGAAAAGAGTTTTTAAAATTCTTGGCGTGAGCTTTAAACAATAGCATAACAATTGTTAAGTTCCAAGATATTCTTGAGGTTTTCATATATGTTTTGGGAACGATATGCGTACATTGATTGAATTTGCATATCTGACGGAATCTTTCGATTTTTAACCATGCCTGTCAACAAactaaatgtttttaaagtcgAGAGATTTTGTTCCATTGTTTCGGTGTCAACCCTATCCAAAGAACGCGCTCAGCGGAATCTATAGGTGATTAATTTGGCCCGTCATTTATGGACACAAAAAGGCTGAAATTAGgtctattgttatttttatcgaaGTACAgtgatattttttaatttattatatgactggctctttcggcggtcaagatgaatcaattctcctgctgtgattggctacccgagAGGTGAAGATGGAACCATCGTGACCGCTCGGGATATCCTGtttgtcccgcgttttactgtctttttatagcgtcctttgagtcatataataaatcctttattgaccacgcttgttcggtcaagatggcgggatattggcctcgttctttttttgcgtgtttatggacctcgacttcgtcttggtccataaacacaccaaaaaagaacttggccaatatcccgccatcttgacctcacgcttggccaataacccatatatataacTTAAATATGTTCTGAAGAGCGATTTAAAataccattttgctaatgatcagttcctggtgaatagTGGGTAggtccagtcctttgtgggggcaaacggtcaaaattacaatttcaaattgcgtcctaaaatggccgtttacccccacaaaggactggatctacccacaattcaccaggaactgatcattagcaaaatggtgtattgaacCAAGGACATAATTATTAAGTAGATGTTAAACATTTCAGGAACACGACACAACGTTTGAGCTTAGAAAACGTGTTTCGGATGCTTCAGTTTCCCATCGTCAGTTCAAGGATGTTTACTACTTTGTAACTAGATATAAAGTTGGTAACAACGAAATGCTAATCAGTTGTAATTAGTACAAATAATAGCTGATTACAGTTAACGTGATGCGGATAAAATCTGAGAAAATACTACATAATACTTACAGCGAAATTTGCAGATTACAAATAATATGATACGGATGCAAATCTGTGAAAATATTACATAGCAAGGCaatatataataattctatGAAAATCAAACAGCGTAGtgatgatgaaaaattaaagtaaGAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43299	AP-5 complex subunit zeta-1 OS=Homo sapiens OX=9606 GN=AP5Z1 PE=1 SV=2
Q3U829	AP-5 complex subunit zeta-1 OS=Mus musculus OX=10090 GN=Ap5z1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005513 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14764 all species →	SPG48	AP-5 complex subunit, vesicle trafficking	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR028222 all species →	Family	AP-5 complex subunit zeta-1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46488 all species →	AP-5 COMPLEX SUBUNIT ZETA-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0044599 all species →	Cellular Component	AP-5 adaptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19025	AP5Z1, SPG48; AP-5 complex subunit zeta-1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.