Detailed information of pspe_0.1.m1.13477.m1 in Pachyseris speciosa

Genomic Location: Sc0000046:766131...774659
NR annotation: XP_015771783.1, PREDICTED: nuclear protein localization protein 4 homolog [Acropora digitifera]
Species Pachyseris speciosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P60670Nuclear protein localization protein 4 homolog OS=Mus musculus OX=10090 GN=Nploc4 PE=1 SV=3
Q9ES54Nuclear protein localization protein 4 homolog OS=Rattus norvegicus OX=10116 GN=Nploc4 PE=1 SV=3
Q8TAT6Nuclear protein localization protein 4 homolog OS=Homo sapiens OX=9606 GN=NPLOC4 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004901 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05020
all species →		zf-NPL4NPL4 family, putative zinc binding regionFamilyInterproscan
PF11543
all species →		UN_NPL4Nuclear pore localisation protein NPL4FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007716
all species →		DomainNPL4, zinc-binding putativeInterproscan
IPR024682
all species →		DomainNuclear pore localisation protein Npl4, ubiquitin-like domainInterproscan
IPR016563
all species →		FamilyNuclear protein localization protein 4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12710
all species →		NUCLEAR PROTEIN LOCALIZATION 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0031625
all species →		Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for pspe_0.1.m1.13477.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP