Gene detail

Detailed information of pspe_0.1.m1.13820.m1 in Pachyseris speciosa

Genomic Location: Sc0000049:424641...439665
NR annotation: CAH3151300.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.13820.m1

Transcript

pspe_0.1.m1.13820.m1

CCTGCACACTCTTTCACTCTCTCCTACCTCCACGAGTCTCCAGGCCTCCATTATCACAGCATACTGCAAACGGTTGAAAATAAACCCATTCACTTCTTTCTTTATAACAACAGGCTTTCCGGAAAAGAAGTTGAATATGAAGAGGAATTTCgtgataaaaaaaactttagCTCTCCCGTGTCTGCCCTGGAGAAAGGTTTGAGTCGCGTGACTTCGATCTACCATAACTACACTGTTTTTAATGGCTGCCAGCTTTCAACCCCCAGCCATTTGTTTGAGCGTAACATCTCCCTCAACGACCTTGATCTGGCCTTGACTGTACGAGAAATCGTACGCAAAGATGTCGTGGTGCCAGAAGAAGCCACGAAGCACCGCCATCTGGGCGCCTCGACCAGCTATTCATTCGTGCTGCCATCGCTTCAAAACCTGGAGGAAGAATTCCGCAAGTTTGTGTATAGTTTTCTTGTAGATGGTCACATCTTGAGAGAGTTAGAGACGGCGAGGAGGCTGAATTGGTGCAGCTCGTTATGTCGGATGGTCACGGTAAACACACTGGGTGATGGAAACTGCCTGATGCATGCAGCGTCCATTGGAATGTGGGCCGTCAACGATCGGTACCAAACTCTAAGGAAGACTGTATACGAAGCACTGGTGGAGGACGTGGAAGGATTCTACCACAGTCGTTGGAAATCTGAGGAACATAATCAAATGGCAACTCACAGTGGTGGGTATGAGCGAACAGAAGAGCAGTGGGCTTACGAGTGGGAGGAGGTCATAAGACATGTCTCGCAAACTGAATTTCCTCTTGGCGCAAGTGGTGCACAATTTGGAAGCCTGGAAGAGATCCACATATTTGTCCTGGCAAATGTCCTGCGCCGTACCATAATTGTAATATCAGATGAAACACTGAGGGGGTCATTTGATGAGTCATATGCACCAATAAACTTTGGAGGTGTTTACTTACCATTGCTGTGGGACTCTATAGACTGCATTAAAAGTCCACTGGTAATTGGTTATGCTGATGGCCATTTCACGGCAGTTGTGAGTATTAAAGATGGCAAATTAGATCTGGGTCTGGAAAGTTCATCATTTGCTACCTCAACTAACTGCATGCATGCAGTTCCATTGGTCAAGTATGACGGAACCCCACTACctgttcattttctttttgattATGAAATGCCACTGGCAAGTGACCGTCTTCGACAGTACTTGGATTGTGCCAAAGTGCCTTTTCCAGGCAGTCCTGGTGAACGCAGACCGCCCATACTTGTTGCAAAGTTGCATTTTGCTGAGGAGCCTCAGTGCTTGAAAGATCTTGTTGAGGGCTATTTTGCAAAGGCTAGAGAGGAATACCAGCGTGTTTCAAGACAAAGACAACTCAGTCCACAGTTTCTGCCCGGGACCCAACAGCCAGCCCTTCAGATTGTCCGTTGTCAAACACCAGGCTGTGATTTCTTTGGATCCACTGAAACTGGCAATCGCTGTTCAAAGTGCCTTAATGAGTATCTGAGAACCTTGGGGGCAGGTTCTGAGCCCAGTCCACGTGTTCTGACAAGACAGATGTCTATGGGACGGCAGAGACAAGATCCTAATGCCAGTGCAACGGTATCCTCCTTGAATCTCCCACTTGCAAGGTCTGGTAAATGCCGCACCACAGGTTGCAAGTATGCAGCCATACCGGAGCGAACTGGCCTTTGTGAGAGGTGTTTTGATGCCGAGAAAAGTGCAGAAGAATTGGCAGCAAGTATGAATGTCATTAGTTTGGCATCAGCAGTTCCTTGTGCCAATCGGGTCAATGGTTGTGAATTCTTTGGTCTGCCAGAACATCATAACTTGTGCTCCAGATGCTACAGGGCCTTCTGTCTTCGGATGGAGAACAGTTTGGGTGTTGGCTCACCAACTGGGTTACCACCAAGTAGTCCAACAGCAACCATGGCTGTCCTGTGTCAGACTCCAGGCTGTCAATTTCAAGGTGTCCCTGCCTTGTATGGTATGTGTGTCCAATGTTATACTGGATGCATCCACAATTTTATAACTTCTGAAGGAAGATCAGTGGGAAGTGCCTTGCCAGCTGTTCCTCTTCTTTCAACACCACTGCCGCCACCTCCACCAGATGTCTCAAGCAAGACACAGTTACCAACAGGGACTGTCAAGAAAAGTGTTTTACCTACAGGTGCTGGGAAGAAAGGGGTCTTGTGTGCCTCTCCTGGCTGCTGTAATGAAGGTGTTTTTCAGTATAGTGATCTGTGTTCAGAATGCTATGGGAGAAAATCTGGTCCAGCTCCACAAATAAGGAGCAATCCAGGGCCAGCTTCAACTGCTGCTGCTGGTATTCAATTCCCAGTAACTCAGCTTCCTCCAAGCATGGCAACACCAACAGTATCAGTTGCCCCAACCCACCAACTGACTAGTGTCCTATGTCGTCAACGTGAAGTTCATGTTTCTTCTAATGTCAATCCTGAGTCAAGGTCTCAACTTCCAGGAACGCCATTCAATGTGATGACCACAGCAAGTTCAACGGCAGCAAGCGTGCCCCCAGCACAGATGGCAACAGGTCTCTATACAGCACCTGTATCCTCATCAGCGCAACAGGTTGGAGCTTTCCTTCAGGGTGCCACTCCAGCTGCTGCAGCATCAGTTGCACCAGTCCCTCAAGTTAGATGCACTATGGGGTGTGGGGAACCGGCAGTACAAGAAAGTGGCCTGTGTGAGCAGTGTTACCTGCGAGCTTTGGAGCTTGAATTGAACAGAGAACCAGCCCCACAGCCATCCAGACAGCAAAGAACAACAGTATCTGGACCTTCCAGAAACCAGGTAGAACAAAGAACTGCCAACATTACAACCAGCTCCAGGGGAAACCTGCAACAGATTGAGCTATCGGCAACTGGCAAAAAGGCAGGCAGTGTGACTCCAATGCCATGTATTTCACAAGGATGTCTGCGTTTTGGCACTCCAGACAAAAATGGTTTTTGCGAGGCTTGCTTTCTCAAGAAGGGAAATGCACGGCAGACCACCACATCAGCTTTACCAGCTAACACACCACAAGACTTTAGCAGCAGTAACAGTCTTTATGGTACACGGCCTACTGAGCAGAGTCGAAAGTTTGGAAGCAGTGTTCACTCAGCATCTAATGCACTCCAGCATCCTGTGCAAGTCTGTCAGACTCAAAGTCCACCTTATCGATCTGCAGGATCCAGAGCTTTTGGCATTGCTGAGGGAAATGTCCAAGGCCTGAGATGCTGCGGAACCAATTGCTCCTTGTTTGGGACACCAGAGATGAATGGGTACTGCTCTCGGTGCTTTTTGGAGAGCACAATACCCCAATCTGGACCTTGCTCAGTTCCAGATTTCCCGTCTGGAGCTTCATCCCAGTCTAGGCGCACAGATGCCTTGTTACCTGCAGAATGCATCGTCACTGGGTGTGTTAACTTGGGTTCCCCTGACCGACATGGTCACTGTGCAGAGTGCTTCAAAAGGTTCTATCCAAGAGTGATTCACCATGAGGCATTTGCACAAAGGCAATTGTCTGAGCTGCTGGAGAGCAACAATTAGAAGAGTTTGGTAGAAATCAAGTTTGAAAATCGCAGCATAGTTCTCAGGTTGAAattataaaagcaaatctcaGCCCATGTACAGTGTATTAGCTGCACAATGCAACATTCCTCGGCCTTGAGTAACTGATCGTATTTTGCAACCTTGGACTGTGGTGtaattaaaaatagttagctGTCCATTTTTGATTGTGACAGAGGTCCTTTGTGTACAAGTACTTCATCATgatcatgaaagaaaacgaaaattttgcGGGGACAGCTTTGTTTTATCACACAGTAGTTATTGAAATGTTCTGTATTATAATGATCGTCATCTGTAAATTAAACTGTGGCTTGTGTGGTTGTCGAGGCCAAATGAACAGCCTTAATGTCGCTTTTACACCAGCCTCTTTATTGTAGAGACTGTTGATCTCCACATCAGGTAGATTTTGTTAACTCAAAAAATCTAAAGGAGTGATGCAAGAACACAAAAACAGATAACTCTTGGTGTAACAATAACAATTAATAGATTACAAGAGTAGCGTTATATTGTTTAGTTTTGTATAGTTACTGTGGTTTGAAGAAGCTCTACATGTAATTTCAATGGACCTGGTCATAAAGAAGTCCTACCAGTTCATGGCTAACCTACATTGTTTGGCCCAATTGAGATGGCTCAGAgcgaaaatgtaaacaaagaaatttcagtcttaaaacaacaataaattgGACATGTTGTGGTTAAACCGAAAATCAAGTTCCAGTATTAAACAGCAATGTTTTGAATAAACGTTTTTGGGACCGTTGCAACAACCCCCTTCCGCCAACCCCTGGAGAGGTACTCCTGCATATCGGCTATATACATTGTAGGTATGTGCTACACGATAGAAtgtggtttttgaggttctccatctttaaatagggtatcatttttgcccatgttggcaCAGTgctcccggtgtgatccttagggtgcctaaattgtatcagctaaaatagcagtgAGTAAATACCCAGCTAGGTTCCGTGGCGGTTAGTCGTTGTTTGGATCCTCATTTTTCAGGTTTAGGCCTTAAATAGGTATCAATTTTCCTTTACTTCATccttaaacagggtcagggtttaagaccctttgCGGCACTCATCTATCCGAAAATTATGgaaccaccctcCACCCTCCGCCCTCCACCCTCCTGGGAGTTGCAAAGAAGTGATCACAACAAACAAAGCCAATAATTCATTATAGCAGCTGCTCGTTTTGATAAAAGCTTTGCTTCTGGGTGAAAACTGGAAGGGTGTGGCCATTCACAATTGAAGACTTTTCAGCAGCTCTTTGTCcggattttgttttgttttgttttgtcttggttttgtttgaaatttgtaCTTTAACTTGTTTTGCAAAGGTTTTTGCACCTTTGGCAGTGAAAAGGTTTTATAACTTCATTCCAATCAACAATCAATAGTTTATTAACActagaaataattattttgtgtaGAGAAAATTTAGTAATACATTCTGTTACTTTTATAAAAACCTGTGAGATGTTGGTATTGTAAAACGACCAATGTGTATAAAAAGTTAACTTCAATAAATGTACATTTGTGTTAAGGTATGTTTTAAGATGGGTGAAAGAATGGCGATCTCCATCAAAACTTTAGAGTTTTGGAAGTTCAAAAATCGGTCATATATAAATAGCTCGGTATACTAGTACATTTAGAAAATCGGCCGCTTGGAATGCGAGTAATAAATTCGTCA

Protein

Uniprot

Gene family

Uniprot term	Description
P21580	Tumor necrosis factor alpha-induced protein 3 OS=Homo sapiens OX=9606 GN=TNFAIP3 PE=1 SV=1
Q4R8W3	Tumor necrosis factor alpha-induced protein 3 OS=Macaca fascicularis OX=9541 GN=TNFAIP3 PE=2 SV=1
Q60769	Tumor necrosis factor alpha-induced protein 3 OS=Mus musculus OX=10090 GN=Tnfaip3 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU
Ubiquitin Family	UBD\|ZnF\|ZnF_A20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF01754	zf-A20	A20-like zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323	Domain	OTU domain	Interproscan
IPR002653	Domain	Zinc finger, A20-type	Interproscan
IPR051346	Family	OTU Domain-Containing Deubiquitinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007010	Biological Process	cytoskeleton organization	Interproscan
GO:0016477	Biological Process	cell migration	Interproscan
GO:0030177	Biological Process	positive regulation of Wnt signaling pathway	Interproscan
GO:0035523	Biological Process	protein K29-linked deubiquitination	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071947	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan
GO:1990168	Biological Process	protein K33-linked deubiquitination	Interproscan