Detailed information of pspe_0.1.m1.14420.m1 in Pachyseris speciosa

Genomic Location: Sc0000053:1832137...1872915
NR annotation: RMX58652.1, hypothetical protein pdam_00017966 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P49746Thrombospondin-3 OS=Homo sapiens OX=9606 GN=THBS3 PE=1 SV=1
Q05895Thrombospondin-3 OS=Mus musculus OX=10090 GN=Thbs3 PE=1 SV=2
Q9R0G6Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 GN=Comp PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF12947EGF_3EGF domainDomainInterproscan
PF13306LRR_5BspA type Leucine rich repeat region (6 copies)RepeatInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF13855LRR_8Leucine rich repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR003591RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR024731DomainEGF domainInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR026906RepeatBspA-type LRR regionInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06839SLIT2; slit 2-Glycosaminoglycan binding proteinsko00536deepkoala

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