Gene detail

Detailed information of pspe_0.1.m1.14565.m1 in Pachyseris speciosa

Genomic Location: Sc0000055:397892...442257
NR annotation: XP_029186415.2, structural maintenance of chromosomes protein 5-like [Acropora millepora]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.14565.m1

TGTAGGACCTATGGAGACTGCGAGTTCAGACCTGGTCCTCATTTGAATGTCCTTTTAGGACCAAATgGTACTGGTAAATCTTCTATTGTCTGTGCAATCTGCCTTGGACTTGCTGGTCATCCAAAGCTTCTGGGTCGTGCCACAGAGGTTAGGGATTTTATCAAGCATGGACAATCTCAAGCGATGATTGAGATTGAACTCCATAATTCCAATGGGAGGAATCATGTTATAACAAGAGACatgtttagaaatgaaaatcgTTCCAACTGGAAAATTAATGGCAAAGCCACCACAATGAAAGAGGTTCAAGAACTAACCAAAACACTGAATGTACAGATTGGCAACCTTTGCCAGTTTCTCCCTCAGGACAAAGTGGCAGAGTTTGCAAAGATGTCTCAGCAGCAGCTCCTGGAGGCCACAGAGAAAGCAGTTGGTCCACCAGACATGTTTGACATTCATCAGAAGCTGATTGAACTGAGAAAACAGGAAAAAGATCTTGAGGTATCTGTGAGAAACAACAAAGAGCATCTTGAAAAGCTGCAACAGCAAAATGAACGGCTTGAGCAAGATGTCAAAAGGCACCAGGAAAGGGAACGACACTTACAGAAAGTGCAAATACTAGAAAAGAAAAGACCGTGGGCAGAATACGAGGCAGCTCGTAAACAGTTTGTGGAAATCAAAAGCCAGAAGGATGAGATAAAGAAGAGACTGGATGAGGTTAGACGACAAAATGCCCCAATGAAAAAACGTCTGGATGAAGTAACAAACAAAGCCAGAGAACTTGAAGACTCCACCAGGGAGCTGATACAGCAAGGCAATGATGTGTTGAAGAAGGCAAAATCAAAGAGTGAACAGATTGAGAAGAAAGGGGATAAGATTGAGGAATTACAGGGAGAATTGAAAGACTTGAAAGATGAGGAAAAGAAGAGACAGAAAAAAATGAGTGAACTAGAGAGGGCAATACAGGGAGTTCAGGATGAACTGAATCAGTTACCAGACCCATCTGAATTACAGCCTCGTATTGATGAACTCAATGGTCAGGCTCGACAGAAAAACCGTGAAGTGATGACCATTCAGAATCAAGCTCGAGGAATCAGAGATGAATCTGACAACTTAAAGGCACAGATACAAGATATCAAAAGCAGAGTTGCTAAACTTGAAGACATGAAAAATCGTCGGCTAGAGTTCTTGCGCAACAGACACCGGGAAACATACAATGCAGTTATGTGGCTCAGGGAAAATCAGCACAGATTTAGTAGCCCTGTTGAAATGAAGGATGTGAAGGATGCTAAGTTTATTGAAAGCCTAATCAGCCAAAATGATCTCAAAGCCTTTGTCTGCAGTAACAGAGATGATTTGAAGCTGTTCTTAGACGAGGTGCGTGATAACCAAGGACTAAGAGTTAATGGTGTGGCACCACCTGATGAACCTTTGGACAGTTTTAAACCATCTCGGTCATTGAAGGATATAGGTCGCTGGGGCTTCTATGGTTTCATGAAAGACTTATTCACTGCACCCAATGATGTGATGCGGTATCTTTGCTATAGTTATCGTCTCCACGACATTCCTTTGGGAAATGACTGGACTGACAAGAATTCAGATAAGGTGATTGAGGAGTCAAGGATTAAGGTGTTCTATACTCCATCTTCAAAGTATACTGTGAAACAATCACTTTATGGGAACAGGGAAAGGTCAACACTAGTTAGTCACATCAATGAGGCCAGGTTGTTCAACATTGCTGTTGATACAGAGAAGAAAAAACAGCTTCAGTTGGAACAACAGGATGTCAATCAACAAATGCAAGAGAAAAATGAAGAATACAAACGTTTGAGTGAGAGGGAGAGAATTTTACAGAAGGAACAAGAATCAATGAGGAATGAAAAGAAAGAGCTATCATCAAAGACACAAAGAAGGAGAACACTAGAGAACCAACTGGAAACCAAACAAAAACACCTTGAAACAGTGCAGAAAGCAGCTCCAGATATAGAgggacaaacaaagaaaatacagCAACAGATAGTGAAGATCAATCAGCAAAGAGCACAGCTTGCTGTGGAATACAAGGAGTCTGTGCGAGAGTGTGCTAAAGCTGCCAAAGAGAGGATTATGCAGAGTTTGCAACAAGTACAAATAACAGTTGAGAGATCCAAAGTAGAGGAGATCTTCCGTGAATCATCACAACAGCTAAAAAATCATGAGGCAGACTATCTGAGAATTAACAACAAACTGGAAACACAGAAAAAACTGGCCAAGGATCTGAAAAAAGTTGCTCATGAAAAAACGGGCATTCCTGATGGTGCAGACATACCTGATGAACTTAGAGAGGCATTTAAACTCTACCCTGATACAGTGGAAGAACTTGATGAAATGATTCATGATGAGAAGGCCAGAATAGAGTGTCAGTACCAAAGCAATCCACAGGTGGTTAAAGAGTATGAAAggcgcaaaaaagaaatcagtgaACTCAATGCTCAGGTTGAGGGGCAGGAAAAAGACTTGGAGAGTGAACAAAGAGAAATTACAAGCCTTAAAGAGAGGTGGCTGACACCCCTACAAGAATTGGTTACTCGTATTAATGAAAAGTACGGCCAGTTCTTCCGAATGATGGGCTGTGCAGGAGAAGTGGCTCTTTCATCAGAACAGGGTGAAAATAACTTTGATAAATACGGCATTCAGATCAAGGTGAAGTTCCGTGCAAAGGACAGCCTGCATGTGTTAACACCATTTCATCAGAGTGGTGGGGAGCGCAGTGTGTCAACAATGTTATATCTCATGGCTCTACAAGAGCTTACCAAATGCCCATTCAGGGTAGTGGATGAGATCAACCAGGGAATGGACCCCAATAATGAGAGAAGAGTGTTTGAACTTGTGGTGGAAACAGCTTGCCGCCCCAACACCTCCCAATATTTCCTCATAACTCCAAAGttgTTGCCGGACTTAACGTACACAGACAAAATGACCATACTGTGTGTCTTCAATGGGCACTACATGCTTCCACACACTGAATGGAATATTGGGGAATTTATTAGCAGAAAGAAAGCCTTACAGATGTAA

Transcript

pspe_0.1.m1.14565.m1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CG46	Structural maintenance of chromosomes protein 5 OS=Mus musculus OX=10090 GN=Smc5 PE=1 SV=1
Q8IY18	Structural maintenance of chromosomes protein 5 OS=Homo sapiens OX=9606 GN=SMC5 PE=1 SV=2
E7F0W1	Structural maintenance of chromosomes protein 5 OS=Danio rerio OX=7955 GN=smc5 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003514 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan
IPR027131 all species →	Family	Structural maintenance of chromosomes protein 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45916 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22803	SMC5; structural maintenance of chromosomes protein 5	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.