Gene detail

Detailed information of pspe_0.1.m1.14723.m1 in Pachyseris speciosa

Genomic Location: Sc0000056:1649263...1657634
NR annotation: CAH3124150.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.14723.m1

AACGGATTTCTGCTCATGCTCCACTTGAGTTACCGCTGATAAAAGATTGTTCCAGAATACTTGCTGGCCAGCGGTTTTGCTTTTTGTTGTCGTGTTTGTTTTCCAAtcgtaaatttttttttcagcgtCTTTATAAATTGATTGTCAAAATTCCCCTTGTCAAGCTTTGGATGCCAAGAAAACGGCGTTAGTCATCATGGATAAACTATTCGAGAAAATAGGAGACCATTTTAACAATCCGGAGATGTCTGACCGAATTCTGGTGGTGAAGATTCGAAAAGATGGCTGGGAGAAATTAGAAGCTGCTCGCCGAGTTAAGAACATCACGAAAACCAACTCTAGCGACGAGGATACTTGCGTAGCAACAACTAATAAACCGGAAGAAAAGCCAGACAAGTCGGAGGAAAATGAATATGTTGTGGTTGACAACGAAGAATCCCCAAGATCAAGTTCTGCCTTTGAGGATTTGAATGGCGCTTGCGATTCTAGAACTGTGAGTAGCTTGAGCTGTGACTCGGGAATAGGCGTGGATACGTCTTTGAGCGAAGCAAAAAGAACTGTGAAGAGTAAAAAGCGAGAAGAATCAGTGGTTGCGGTGGAGAAAGAGGATTCAATGACTTCTGAGAACTCACCTTCAGAACAGCAAGTTTCCGGCGCCTCGTCATCTTTCTTTTCGTCATACACGCATGCTGCTTTCAATAAATTACTAATGACCGACATTGGTTATGGAAATAAAGCCGAGGCTACAGGCCTTACAACTGCAAGCACTGCAAGTTCTATCGGTGCAGAAGAAGAGGCTTGTATTCAAACTACAGATAACAGTGTTGTAAAAAAAAGTGAAGAGGACCCGGTGGTACTAGCAGACACCGTGGTTCGAGAACACCAGCTGTGTGTACATAGCTTTTGGCTGGCATTGAATAGCTCCTATTTCAGGAGTCTGTTTTTCAGTTCTGGGATGAAGGAAACCAAAGTGAAAAAGGTTGAAATGAACATCAGTGAGTCACTGTCATCAATGTTCTTGCTGTTGATTGAGTCATTATATAAACCTGATGTAGTGATGACAGAAAGTGTAGAGAATCTTCTTGTTCTCATGAGGCTGGCACATGTCTACGATGCTGAGAGCACCCTAAAGGCTTGCCAAAAACTTTTGGGCTCAGCTGAATTGACAGTTGAGATTTGCGACAAGGCCCTGAATATGCTCGAACATGAAAGACTCCCTGAGATGGCAGAATTCATCACCCGATGCGAAGAATTTCTTGTCGAAGAGTTCAGCCCGTTGGACTCTCAATGGTCCAATGAAGACTTTCTCTCTCTGAGTTCTAATGGCCTTCAAAAAGTTCTTTCCAGTAATGATCTCTGCGTATCTTCGGAAAACACCGTGTTCCTGGCTCTCATGAAGTGGGCGGAAGTGAATGAGGTGTTTGATGACCAACTTGAGCCGCTGCTGGAGCTCGTGCGGTTTAAATCCATGACCATCAACTATCTCCATGATGTGGTCACCAGTGACCATCCCATCGCTTCTACAGTCGCTAAGTTCCCGCTGATGTTCGAGGAAGCAGTGTTTTATCATGCGTTTTCTAAGGAAAGGCAGTGTGAAGAAGGGGAGTCGGTCGCGAGAAAAGCCTACGATGAACCTGTTGTATTCAATTGGACAGTGGACATTGGAGAAGATGTTGAAGtagagaaaaagaagaaaatcatCAAATCGCCGCATTTCTGGGTCAGCGGATACGAAATgTTCTTAGAGCTTAAGCTAAGGACTTCTGGTTGTCAAGGCCTTTACCTGACCATAAGCACACGTGACTTCCGGCACAGCAGCAAGGGATTCGTCAAACTGGCTTACTCTCTGACTTCAAACTTTCCCAAGGCCACGCGAGTCATCAACGAAGCCGACGTTTTTGACCGGGAGGGGTCTGGATGGGGCTATGAAGAATTCTTTCCTCTGAGCTGGGCAGAATTCAAAGACCAGCTGAAAAGAACTCCTTTGATAATTACATCACAAGTTAGTCTTCTTGAGTAGTGGAACTCAGATTGACTCAGTGAGTTCTTGGTCTCACGGAAATCAAAGTTTATAGACTATATATCTGCCTCAACTCTGGAGGCGCGTCTATAATGTGGACAGGCGACGGACGAAGGAAATAATCCTGAACCCTGGTAATGTGTTCGTACGGCCCTCATAGGGGAATTTTCTCAATactttcacaatgaaagcgcgcgtggggccgtacgggtcatatgataaaatAACATACGCACATCGAAAAGTATTTATAAGGTGACTCTTTTACCTGATGATTTTAAAGATAGCAACCCCATCAATCAATGTCGAGAAAGTTACATAATTCAGCCGTGAGGCTGCGAAGTAATTTAATGAACCATTTATCTTATTTATCTCAAAGTTTTCACTGTGGACGTTGATGACTCGGTCTCATAGCATTTGTATGAAGTTAGGTGTTATGAAGTTAGTGTTAATCTGGGAAGCTAAATGACACTGGAAGCATAAGAAAACCCACAAACAATGGTTCGGTTGGTTTAGTAGAACTTCACAGCCTTACAAAACTACAAATAAGCCTCTTTGGCTACAAATAGCGAGGGCCAGGCCTTTAAAGTTGTTCTCTTGCGTTGAGGAAAAATGGCTATCGCCGATTATAGTTTGTTCCtcttttgagaaaatagcttgatatttttcttttggtgttctaAGAGCATTTTGGCTGCGAAGAGAAAGGTACTTTCGAGTATGATTTTAATTTCAAACCCAAAACGCCGGTGAAAATCATGATGATGTACCCTTTCAAACATCATCGACATTCAAGGATGTCGCTAATctccccgccccccccc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651	BTB	BTB/POZ domain	Domain	Interproscan
PF07707	BACK	BTB And C-terminal Kelch	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011705	Domain	BTB/Kelch-associated	Interproscan
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR045890	Family	BTB/POZ domain-containing protein POB1-like	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46336	OS02G0260700 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10478	BTBD3_6; BTB/POZ domain-containing protein 3/6	-	Ubiquitin system	ko04121	deepkoala