Gene detail

Detailed information of pspe_0.1.m1.15485.m1 in Pachyseris speciosa

Genomic Location: Sc0000062:880113...885728
NR annotation: XP_020620953.1, BTB and MATH domain-containing protein 36-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.15485.m1

ATGGCGTGCATCACCGGCTTCGCTTATGCGGAAGCAAACACTGCTCAACTCTGGAAGCCTGagtCGCAGGAAAAGGAAGAAGCTAAGAAGAACCCCTTTTGTGAGCCGTGGGAAGAGAGTGACTTGATTCTGGTGGTGGAGAACGAAAAGTTCCATGTTCATCGTTTGATATTGAGCATGAACTCGCCAGTGTTCAAAGCCATGTTCAAATCACACTTCAAAGAAGCCACTTTCAACGAGATCCCGCTGCCCGAGAAAAAAGCGAGTGAATTGCTAGACTTTCTGAAGCAACTTTACATTCAAGAGCGAGAAAAAGTCACCATGGAAAACGTGGAGCATCTTCTCAAACTTAGCGATGAGTACCAGGTGAAGCCTATCTTTGATCGCTGCAGTAGGTTCCTCGAGAAGCAGTCGATAAAGGAAGACAACGTAATGAAGATTCTGATGCTCTCTACCTCGTACAAACTGGAGAATGTGCGTCAGCGCTGCTTCAACTTCGGCAAGGATATGAAACTTCAGTCCATACTGAAAAAAGCTCTACAAGAGGACCTTGAcaatgaaaatttaaaaaatattctgTCGCACAGAGTTGAACGTTTAGAAACTTTTCTTGATAAGGTTTTTCCCGAGTTTATAGGGATGGTGGAACGTTGCTTTTGGCTATGGCATGTGGCTAAAAAGGATATGAAATGGTGTCAAGAGCATTTCGCCAATGTTAAATCAGGCACAAACATTGATGAGTGTATAGCGGAATGCAAAGTTTGTCAAAACATGTTCGCCACAATCATTAACGGCACTCCATCGAAGTACCGTGTCAGTTACGGTGTCGGTTTATTTTCTAGCAATCAGTTGCCAAAAATAATTGAGGAATTTTTTAAACTGACAAAACTCAAATAAGCAAATTATCTTGGTGTGGGCATTACGCCTGAAGGCTAAATTCTTGTTTGCGTCCTTCAATATTTTCAAGGTCTTTCAACTCTTACTATTTCAGCTGCTCTTCTCGGACTTTTGGCTCTCAGAGAATCGTTTTAACTGGTAGGCCCATGTTCCTAACTATACTCACTTTATGGTATTTtccatttagggcctgtttacatggagggtaGGTGCCCCGGCTGACCGGATTACAcggctaggagggttaaaacatagcccTGGGCATGTAGACAAGGTGCCACCGGAAGGCAGGCTACCATATCTAGTAGTATAAACGCTTCAAAGCGTTTTCTAAAAAAACTTATGGAAaattggccctcccagagtagctcggttagccgggacaccctccctccatgtaaacaggcccttaattTGCGTCACAACTGACTTCCATTTGGAAGTAGTTCCTATTTCAAaatattaaccatttactacATTGATAACGTGTTTCTGACCACCCCATTCCCTGCTCAATCCTTGAAATCTCACTTGATTTCATCCGTGAAAGACCGCAACAACCTCAAGAACACAACAGTTCATTTTAAAGAGCTCAGAAGTTAATATTAACTTTTCAGCCATCAGAGTGATATTAAAGcatgattttcttttccaaccacCGAGCGCAAAACTTAAAGCTTAAAAAACTTAAAGCTTAAAATCAGCAAGTTTTCGGCTCAATACATCCATAGTGGTTCGTACTGAGAATACTGCCAACCAACCACGTGCTCTGACAAGCGACTGAATGAGTCCATGCTATATCGGTGGCAAGATGCACATCACATATATTGCTGACTGTGACCGGCTAAGACCTGTTTCAATTGCAGCacatatcaggggcacccatcgacaagtttcggtagatatctgttcggtggagggtaattcgccttgtgctttcggcgtcgatgaaagagtgcactcggattttcgtagctaaaacgtggcctagaagattcgcaatggggaaatcatagcccctgaggttttcgaaaaggtagtaattgttgtttttggcagtcaaaaacgtcagctagcattttcggaaagaaaatagttcccttaaaagttcgtggaaagtttatttcagcttgcattttctcaatggaacattttgttccctaacattttcgggtaagtaaaatttcagctaggaatccgaacaaatgaacttcttctagcttatgaaaacatcactataaacagacttcaaacaccataagttaCTTAAAATGCCtatctacagcttttgcttgatttggctcgttgagtgcccctgacATATCATCATATTGACTGCCCTTTTAGGTCTAACAAATTCTTTCAGTGCTTGTGGTTATAGCTGACGTTTGTAAAATATAGGGTGAGTCGAGGCTTAACTGAATTCGATCAGTGTCATGAAATGCTCGATGTTTTCGCGGGGAAAGAAAGTTCACGGCCACTTACATACAGTCAAGTTGAGAATTGGATTAAATAAACAAACCATGTATTACGTAAATGGAGTACCACTTTTTCGAAACCTAGTTTTTGACAGTTAAGCACAAAGATCAACTCACAACTCAGTTCTTTTCAGGTGTACATAcaaacgaaataaaaaaaagcatggtaataaaatttttattaaaCTAGACCTTATCAGTAACTGGAAGagtgaatgaaatgaaatgaaaactgGACGAGTCTGAACTTTGCCAGCATCATTGTCACACATATAGATCTTTATAGTTCAAAACAAATATATCCCTCCAGAGTATGCTAATAACATTAGGTCATCATGTCAACCAAAAGGTCACGTATTGCTGGTTTCCGGTGCGATACCGGTACATGTGTGACGGAAAAATGCGATTTTACTGGTTGAAATTAGCCATTATGGAGAATTTCTTTGCAGACGAGGGAGTTGTCAGAAATTGTCTCCCGGAATTGTCTGATTGAG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22744	HELIX LOOP HELIX PROTEIN 21-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan