Gene detail

Detailed information of pspe_0.1.m1.15908.m1 in Pachyseris speciosa

Genomic Location: Sc0000066:588259...624975
NR annotation: KAJ7339400.1, Small RNA 2'-O-methyltransferase [Desmophyllum pertusum]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.15908.m1

Transcript

pspe_0.1.m1.15908.m1

ATGAAAGGAATCCCAAGAAGCCTCATAAGTATAAACCTGGCAACACACAAACAGAAATTCAAGTTCCAAGGACACCTTGTTGCAGAAGGCCTAAAACCAAGCCTTAAGAAGATGAAAGCTGGTCACAACTGGCAAACCCCAAAAGTAGATAGCATTAGTGTGGGAtgccacagGGCCCCTATGAATACCAGCCTCATagctgaatgggctaccctgGTCCTTGCATGGATCGAACGCGGCCTCGTTTTAGTTACTTCCGGGAAATTCCCGCCAGTACTTATTTTGATAGGCGACGTCATTGTGTCAAAAACAACCTCTTCAGGGGAGAGGGGAGATGATAGgaacaaagctgaaggggcgcctgcaatcagtgatttagtgcagagagagaacaatgacACTGAGTATTGGATATCATTCCAAGGATTAGGGAATTTGCTTTTCCGATACCTTTGCCGCTTGATTGTGTTCCGAACTGACAGTTTCTTCACTTTAGTTGAAGGAAAACTTCATTTACTTGGGCTATGGTTAGTAATGAGTGTCCAAGAAGCTACAGCGAGTAATGCCGGGCTTGAAGatgaaagtgaaagtgaatcGAGGAAACAGCTTCCGCTCACAGAAGATGAAGGTGCCTTTAAAGGTCCAACTTTTTATCCTCCAGTTTACCGTCGACGATATGCTGCAGTTTGTGAACTGGCGAAAAAATACCAAGCAAAAAAGATACTTGACTTTGGATGTGCTGAAGCAAAACTTGTGAAGTTTTTAATAAATCAAGAGATTCTTCCTAACATGGAAGAATTGGTTGGTGTTGACATCAACAGACAACTTCTGGAGGAGAATAAATTTCGTATTAAACCTCTTACATCAGATTATCTGAGACCTCGCTCTCATCCATTCAAAGTTTCCTTGTATCAAGgtTCTGTTGCTGAAGCCGATCAAAGATTTGTTGACTTTGACTTGGTTGCTTGCATTGAACTTATAGAGCATCTTGAGCCTGATGTTCTTGATTCAATGCCTGAGGCTGTGTTTGGTCAGCTGTCACCCAAGGTTGTTATAGTGACCACGCCCAATGTAGAGTTCAACGTTCTGTTTCCAAATCTTGTGGGATTCCGTCATTATGATCACAAGTTTGAATGGACAAGAGCTGAATTTCAAGAATGGTCCAACAACCAAGCCCGGAAGTACAACTATACAGTGACATTTGATGGGATTGCTTCTGGGCCAGAGGGCACTGAACACTTGGGTTGTTGTTCACAAGTGGCTGTGTTTGAGAGGATATCATCATCTGCTACTGTCTCAGATGTTTCCAAAATACACCAGCCCTATAAACTGGTTTCAGAGGTTGATTACCCTTTTAGAGAAGATAAACGAACAGAAGAGGACAAGATCTTGCAAGAGGTGGAATACATTTTGTGGTTGTTATCTTCCAAGAAAGAGGAAGAGGAGTATGACctggaagatgatgatgacaagtCCACATCCACTGCCGAGGATGATGTGGTTGACCACATTGGAGAGGAACACAGCAATGACTGTATAGTAAATACTGAGGATAATGAAGATGATGAAGCTTGTGTTTACTCACTTGAAAAGCTCTTCAGCTTTTCATCTCTTTGTAAGATATGTGGCGACATCCAGAAGCTCAAAGATGTTCTCCAGAATTCATCACTGTTCCAGCTTACTGAAGATGGTCTTGGAGTCCTGTGGCATGAACCGTCACAGCATTGGAGCAGTGATGGTAGTGACACAGCCTGGGATGCCTATGGTAATGACGAGACAGTGGATAACTCAAACAGACCTCAAGAGTCAGATTGGGAAGAGCCTGAGAACTGGGATGATGACGGTAGCAATCACGTTTATGGAACTTCTGATCAGCACAGTTTGAATACAGCAACTAATACAGAGGTTTGTTGGAGTGATTCGAATGATTGTTGTAAATTATGGAATGGCAAGGACTGGGGTGAATATGAGGAAGATGCAGTTGAGAAGGATGAAGGTGAAGACTATAGCACCAACCTTCATTACCGAGATAATGTAACAGTTACACAAGAAAGTGATGGATCTTTGAATAACgaaagtgatgatgatgctgatgatgatacTGATGGCCTTTTTTGGATTTCATGTAGCAGCTGATTACTGTTAAAGATATATTTACACTGAAAGAGTTGTTTTTATGAGCATTAAAATTAATGTTACACATGGGCTTCTCAGGAGAAtgaaatgaataaatatatatcATAGCAGAAACCTTTAATAATTTAGGACTTTGCAATTTTATATACCAGTGTGAAATTTTGGTGATTTTAGCATATATCAGGAGCCACAGCAAATCAAATAGaacatttccgaattacctttggcctcttcttCAAAGCAAGTCatagtgctcatcttttcatatgaaaattagtttccattcatacaaaaatgagtttaatttgcttgtgaatggaaactaattttcatatgaaaagatgagcactaggactcactttgaaaaggagaccaaaggtaattcggaaatggcctattgttgACCTTGTTAAAATTTTCAATAGTTAAGCCTCCTCTTTCACCTTCAGTCAAAACTTTAAAAATCAACCTCTACCATCGAATTGGTAATCTTTCAGAGGTATATTATCCCTTGACAACCCTACATCTAAAATGCACATTGTCATAACTTCTCTTCAGAAATTTCCTGTGGTAGTCATTGTGTTGTTGAACTATCTATGAATTtcaatttcattaattttattatcaCAACCAATCTCCTTGAACAGGAAGTGATATTGTAAGGTGAAGTTATAATTATGCTAGTCGTTATAATTATGCTAGTCAGTTTTGGGACTTACGGTACTATAACCTGAAACACCAAAACAAAATCACTGGAATGAAACCACCAAAACTAGTGGAACAACCGGAACGAAACCAACCGAACCACCGAAACAGCATTACCAAAAACAACCAGAACAACCAAAAAATGCTGAAAACCATGCAGACATTGTCTGGGCTCATCACGCAAGGCTATGAAACTGATTTGACAATATGAAGAAGAAGACTGATTAACTGGGATACATGATGAAGGTCCACGAATTTCATTAGTTGTAAGGTGAGTTTACCACTTATTTTGTCTATGACTGAAATGATCAAAGAAGAGAAGGAAGTGCGTTCAAGTTTGAGGTTTTCGTCACTTGGTTCTTGTTTGTTTCAAACCACAGCCGAAAGAGACCTTGTCTTGACTCAACATGACGTTATGATTAGAGAAATTAAAGTTCTGGAAAAGCTAGGGACAAGTCCCTAGAAGAGCCATCACGAGGttgcttttgttttccttaGTTTCACTCTGGCTGTTCCAGTGGTTTTGGTAACTTTGTTTCGGTGCTTCTGTTGGTTTCATTCTggtggttttgttccggtggtttcattttcttgttttgggttttagtacatgccagTTAACAATGCCTACAGTACAGGGTCCTTTTTCAGCTTGTAACAATTTGTTGAAGATGCATAGTTCCTCTTACAATTTTCAAGGTTTTCAAAGCCCCAAAAAGCTGAActtcattcaatcaatcaaacttCATTTATCCACGGGGTCTGTTTCACCAAATAGTGCTCTCCCATGGAGCCGTGCATTAAAAATACGATAACTATTTAATTAACGACGACCATAaagttaaaatagtaaaataagaatgtatagttaaaaagtctaatttatctactactcaaaTTTAGACAAGTCATTTTTGTTATCTCGATTTAAAGGAAACAAATGGCAACCTTTTTCCATCtgtaaaacaactttatttactcTATTTTCTCTAtatgcacacattttaggtatcctactgatgaacagttattacatgcagatatttttagaagcaacaattgtttgcggtctgtcacctttgaattattaTTTTCCTCTTTCTAATAATTCACTTTATCTGTTATTCTGTATTGCAAATCCAGTGCAACTTCAAAATAATGTATTACCCAGTATTGCCTTAGTTTGTTTTTCCCCAATGGAAGACCACCAATAGCAATGTAACACCTAAATTCACTGTGTCATTAGTGATCATATATATCACTATAAATATCTCTTGGCTCCAGCTTATAAAAAAGTTGTGTTAAACTATATAAATTGAGAATACTTAGATAATAATACTATTTTGTACAACACTGCTAGTATAAATAATTAGTGACGTACAAATTATGTGTACAAAACCGGTAAAAGTGATCCGTGACTTCAAGTTGTTATCCTAACTGCACAACACAACACCAAGTACCCTCTATCGGGTTTTATTAGAAGCCCGCGACCGGCAAAAATTGGCacctttgtcagaatttacctttcaccactgcctactttgtctgtattttcactcaaattattaaaaaaattcatgaggtcgccgcctactttagttagctcagacggctatttcaaaacttattgaaactcCTGCACTATTAAATGAACCACTCTAAGTGGTGCTTAGAAATATATCATTTACGGTAAGTCTATCCCTTTCTTTTTTCTACTGACATACTGGTCAACAGTATGAAAAATTGTTTATTACACTAAATTTGACTGGCTTTACATGCCTTAAGAAAACAATGTACCCTCACTGAAATCAACTCTTATTTTGATTTCATTGCTCATTATTTACCTGTGATACCTTAAGTTCTTTATCATTTTGGGATAACTAAACTAGAACAAAACTTTTAGTACTTTAGACAGTTAGTGGTGGGTAACAGTAACCAAATTAATTTATTACTTTCTGTTGATATCGGAATAGATTCAAGGTTACTGGTGTTTGTGATAGTGAAAGTCAACTGTAGCATTGTCATAGACTCTGGCTCCTTCACATACAATGTAGTCATCAGTTACGTAAATGAAAATGGCTCTTCTACACTAGACATTTGGTTCTTCTAGTTCATAAAATTGTTCCTGTTAGAATTTGTTTATGGCCCAGTTAGtgggtttgttgtttttaattagtAAAATAAATTTGGGTTGATAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PY6	Small RNA 2'-O-methyltransferase OS=Rattus norvegicus OX=10116 GN=Henmt1 PE=2 SV=1
Q8CAE2	Small RNA 2'-O-methyltransferase OS=Mus musculus OX=10090 GN=Henmt1 PE=1 SV=1
C0IN03	Small RNA 2'-O-methyltransferase OS=Xenopus tropicalis OX=8364 GN=henmt1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005321 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan
IPR026610 all species →	Family	3'-RNA ribose 2'-O-methyltransferase, Hen1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21404 all species →	HEN1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20798	HENMT1; small RNA 2'-O-methyltransferase	EC:2.1.1.386	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.