Gene detail

Detailed information of pspe_0.1.m1.15934.m1 in Pachyseris speciosa

Genomic Location: Sc0000066:1064308...1076917
NR annotation: XP_029184991.2, phosphatidylinositol polyphosphate 5-phosphatase type IV-like isoform X1 [Acropora millepora]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.15934.m1

ATGGCTGATGGTGAAAATTATTCGTTTTCGAGCCACAATCTTCAAACACCTGCAATGAAGCAGTCCTTTAACAGACCCGCGAAGCTTTTACAACATCGGCAATTACAGACAGCGGAAAACAGACTTGGTTCATCGTCAGACAATGCTTCTGGGAGTCCTAATGATGCTCAGACGGTGAGATTTATGCCTCATCCACCATCTTCCCCGCGGTCAAGCGCTATGGATGTTAACCCTCGTTTGGCAGCATTAAATTCGAAAAGTGTCAAAAGGTCACGGCATGAATCGCCACGGAACTCTCCATCTGGCTCAGAAGATGAGAACAGAATTCATAAACACGTTTCAGGTGTTGTGCTAGACCCGCTGCCTTTAATGCGTCGCGGCAGCACAGGAAGTCTAGACAGCATGGGTTCCAGTGAATCGTTAGGTAGTCCACGAGGTAGAAGTAATCGCAATCTGCGAGGTATAGAACCTTTAAAAGGTATTGGTTCCGATAAAGAAGTGGTCAACAGCTTCAAATCTTACCAGAATAGTGCGAAAAATAATGATACTGGCAAGAAGATTCTGAAAAAAAATGTTGTTCATCCTATGAGGGTAACACATgagcaaaatgatccagaaaagGAGATCTCTGAACAAACAGAAACATCAAATCCTAGATCTAACTCTGAACAATCAGTTTCATTGAATAATAAACATCCATCTGAAGATGAAGTCACGCTGTCTTCTTCTAATGACAGTTTGACTAGTGTTAGTGACAGTGAGGAAAGCAACAGTGACACATCAGAGAGTAAGAATCATGAAAAAGCCATGCAAAGAGACCCTAATTCCACTCTCCCAACCCTTCCTAGTGAACATAATGATAAAAGTCTTGAGACAAACTCATCTGGTTTGTATGAGAGTATACGCCCAAACGAGCTCAGTAGAGATCAGAATAACTCATCATCTGATTTACGGAATCTTAGCAAGGCTTTGCAGAAAGTTGCTACCGACGATGAAAGGTATGCATCAGATACAGATTTGTCTGTAAGATCAACAGGACAAGCTTCAAACCTCTCCACATTATTCCTGCTTCCGCGTGTCTCTGCACGAAGAGCACGGACAAGAAGTGGCAATTTTTTGAAGGAAGAAATGGAACGCTATTTCCCTGATCATCAAATTGGCATATTTGTTGCTACGTGGAACATGCACGAGGAAAAGGAAGTTCCTTTCTTTTTGGACGACTTTCTGATACCAGATTCTACTGACTTCTTACAAGATCTGTATGTTATTGGTTTACAAGAAAGTACATCATTAAGGAAAGAGTGGGAGATCCGTCTGCAGGAGACTCTTGGTCCATCACATGTGCTGATGCATTCATGTTCATTTGGACTGCTGCACTTGGCTGTGTTTATCAGGAGGGaacttgtttggttttgttctGCTGTTTCAGAAGACACTTATGAAGGAAAAGCTATGGATCGTGTGAATGATTACAAGACAATCATCAAGTCTTTAACATTATCCCCCGAGAACCAGAAAAAGACAAACAATAAGTTGGATCTGACAGCAAActttgatcgagtgttttggcTGGGAGATTTTAACTTCAGAGTGACTCTTGAAAGATCGCAAGTAGACGGCGTGCTTGAGAAATATAAAGACCAGAAAAATCCTCAGTGTACGGAGTTATTGGAAAAGGATGAATTGCTAGATCTTATGGAGCAAGGTAAAGTTTTCGTTGGGTTCAGTGAGCCGCCAATAAGATTCTTGCCAAGTTACAAGCATGACATACAGAGCGACAACTACGATTCGTCATCAAAGAACAGGGTACCTTCTTGGACGGACCGTGTACTTTATCGCAGCTCCGATCCTACCAATATCAATCCTGTGATTTACAGCAGCTGTGTTTCCGTGAAGACATCCGATCACAGgCCTGTTTTTGGCATTTATCAAGTCAAACTCAATCCTTGCGGAGAAAACATTCCGCTGACCGGAGGCCAGTACATCCGGGATGTGTATGTAGAAGCGAACCGAAGAAGAGCTGCTGGACCCAGGAATGACGGACAAAGTGCTGTGTGCGTCATCCTGTGA

Transcript

pspe_0.1.m1.15934.m1

GTAAGCCTGTGTGTCCGAGAGACGAAGCGATTTTTGTTCATGTGCATTGTTTCTTCTAACCTGATAATTGAATCTGCTGTTGATGATAGTTgatataattttaattttaattcatATTTCATTCAAATTCATCCTCTCCCGCAAAAACAAAAGCCTCGACCTAGACCATGATCACGAATAAACAATATGGCGGATGAAAACACCAATTGTCTCATCATCTTCGAGTGATGTTCCGCTGTGTTCAAAGCCTCCCTTGGAAAAGATGTACATGATGAATGCAGGAGTGATTCATTATGGCTGATGGTGAAAATTATTCGTTTTCGAGCCACAATCTTCAAACACCTGCAATGAAGCAGTCCTTTAACAGACCCGCGAAGCTTTTACAACATCGGCAATTACAGACAGCGGAAAACAGACTTGGTTCATCGTCAGACAATGCTTCTGGGAGTCCTAATGATGCTCAGACGGTGAGATTTATGCCTCATCCACCATCTTCCCCGCGGTCAAGCGCTATGGATGTTAACCCTCGTTTGGCAGCATTAAATTCGAAAAGTGTCAAAAGGTCACGGCATGAATCGCCACGGAACTCTCCATCTGGCTCAGAAGATGAGAACAGAATTCATAAACACGTTTCAGGTGTTGTGCTAGACCCGCTGCCTTTAATGCGTCGCGGCAGCACAGGAAGTCTAGACAGCATGGGTTCCAGTGAATCGTTAGGTAGTCCACGAGGTAGAAGTAATCGCAATCTGCGAGGTATAGAACCTTTAAAAGGTATTGGTTCCGATAAAGAAGTGGTCAACAGCTTCAAATCTTACCAGAATAGTGCGAAAAATAATGATACTGGCAAGAAGATTCTGAAAAAAAATGTTGTTCATCCTATGAGGGTAACACATgagcaaaatgatccagaaaagGAGATCTCTGAACAAACAGAAACATCAAATCCTAGATCTAACTCTGAACAATCAGTTTCATTGAATAATAAACATCCATCTGAAGATGAAGTCACGCTGTCTTCTTCTAATGACAGTTTGACTAGTGTTAGTGACAGTGAGGAAAGCAACAGTGACACATCAGAGAGTAAGAATCATGAAAAAGCCATGCAAAGAGACCCTAATTCCACTCTCCCAACCCTTCCTAGTGAACATAATGATAAAAGTCTTGAGACAAACTCATCTGGTTTGTATGAGAGTATACGCCCAAACGAGCTCAGTAGAGATCAGAATAACTCATCATCTGATTTACGGAATCTTAGCAAGGCTTTGCAGAAAGTTGCTACCGACGATGAAAGGTATGCATCAGATACAGATTTGTCTGTAAGATCAACAGGACAAGCTTCAAACCTCTCCACATTATTCCTGCTTCCGCGTGTCTCTGCACGAAGAGCACGGACAAGAAGTGGCAATTTTTTGAAGGAAGAAATGGAACGCTATTTCCCTGATCATCAAATTGGCATATTTGTTGCTACGTGGAACATGCACGAGGAAAAGGAAGTTCCTTTCTTTTTGGACGACTTTCTGATACCAGATTCTACTGACTTCTTACAAGATCTGTATGTTATTGGTTTACAAGAAAGTACATCATTAAGGAAAGAGTGGGAGATCCGTCTGCAGGAGACTCTTGGTCCATCACATGTGCTGATGCATTCATGTTCATTTGGACTGCTGCACTTGGCTGTGTTTATCAGGAGGGaacttgtttggttttgttctGCTGTTTCAGAAGACACTTATGAAGGAAAAGCTATGGATCGTGTGAATGATTACAAGACAATCATCAAGTCTTTAACATTATCCCCCGAGAACCAGAAAAAGACAAACAATAAGTTGGATCTGACAGCAAActttgatcgagtgttttggcTGGGAGATTTTAACTTCAGAGTGACTCTTGAAAGATCGCAAGTAGACGGCGTGCTTGAGAAATATAAAGACCAGAAAAATCCTCAGTGTACGGAGTTATTGGAAAAGGATGAATTGCTAGATCTTATGGAGCAAGGTAAAGTTTTCGTTGGGTTCAGTGAGCCGCCAATAAGATTCTTGCCAAGTTACAAGCATGACATACAGAGCGACAACTACGATTCGTCATCAAAGAACAGGGTACCTTCTTGGACGGACCGTGTACTTTATCGCAGCTCCGATCCTACCAATATCAATCCTGTGATTTACAGCAGCTGTGTTTCCGTGAAGACATCCGATCACAGgCCTGTTTTTGGCATTTATCAAGTCAAACTCAATCCTTGCGGAGAAAACATTCCGCTGACCGGAGGCCAGTACATCCGGGATGTGTATGTAGAAGCGAACCGAAGAAGAGCTGCTGGACCCAGGAATGACGGACAAAGTGCTGTGTGCGTCATCCTGTGACAGCTGACGACTGGGAACCACATCCGGGAAATACCTTTCATAAAGAGGACCTGAATTTTTAGCATCCGGGACATAGCTGTACGACATCCGGCTCCTTACTTAGCACGAAACAGACGGAGTACAGAAAAAGAATGCATGTTATTTACATGAGTAGAATGTATCACTGCGCTGTATTATTGTGACCAGGTTTATCATTACGCCCTGTCATTTTTATCCATTTTCAGACGCCTTGAAAATTTCcaatttgttgtgttgtttttcCTTCTGTTGTAAAGTAAAATGATATTTATATTATCGAAAAGCTCATTCTTTGCATTCATTGAAGAAAAAAACACGTGTTCAAAAATGTAAATAGTTCACTTCAGAAGTTTCGTGGATCAGGAGTAGTGAAAGCGAACGgtaattttaattgttttggtggaacattttaaaaagataagttaaCTATATCATTGCCATCATGGTCCAAGTCAATGCACGCATACACGCAAGCAATTGGGCAATTTTGCGTTCTAGGAATTTTTACGATTAAATGAGGTGATAAACTTCTTTATTTAATGTAAAGATAATTATTTACTGGATAAAGTTGTCTTTATCTGAACAAACTCTGCCCGGGCATCATATAGCCTTATATGAACAATACAAAATATGAATTGCTacatgaataaaaattgaagATGAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JII1	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Mus musculus OX=10090 GN=Inpp5e PE=1 SV=1
Q9NRR6	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Homo sapiens OX=9606 GN=INPP5E PE=1 SV=2
A0FI79	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Pan troglodytes OX=9598 GN=INPP5E PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004581 (this species only)

Pfam domain

No Pfam domain signature was detected for pspe_0.1.m1.15934.m1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR053321 all species →	Family	Inositol Polyphosphate 5-Phosphatase Type IV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47039 all species →	INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20278	INPP5E; inositol polyphosphate 5-phosphatase INPP5E	EC:3.1.3.36	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.