Gene detail

Detailed information of pspe_0.1.m1.16045.m1 in Pachyseris speciosa

Genomic Location: Sc0000067:763741...764328
NR annotation: KAJ7358630.1, Y-box-binding protein 2 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P41824	Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1
P21574	Y-box-binding protein 2-A OS=Xenopus laevis OX=8355 GN=ybx2-a PE=1 SV=3
P45441	Y-box-binding protein 2-B OS=Xenopus laevis OX=8355 GN=ybx2-b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09276	YBX1, NSEP1; Y-box-binding protein 1	-	Spliceosome	ko03041	deepkoala