Gene detail

Detailed information of pspe_0.1.m1.16306.m1 in Pachyseris speciosa

Genomic Location: Sc0000069:1359074...1369230
NR annotation: CAH3041868.1, unnamed protein product [Porites lobata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.16306.m1

GTTTGTTCCGTCacacaaaaaaattcaagatggcggagtACTTTGATGAAATTGTTCTTGACGCGGAAGATTTAGAAAAGCTCTTTCAAGCAGCAACAGAATTCGTCAGAACTATGAAAAATTTAAGCGACGAAAAGAGGCTTACTTTCTACGCACTTTACAAGCAGGCAAAAGAAGGACCATGTTCTACATCTAGACCTGGTTTTTGGGATCTAGTAGGAAGAGCAAAGTGGGACTCCTGGAAAAAGCTTGGAGAAATGCCTAAACAGGAAGCCCTGGAACGTTATATCCAGGAACTTTATCAAACTGATCCAGAATGGGAAGCAAAATATGCTGTTACTGATGACTTGAGTGTAAAGGAAAGTGAAAAACCAGTTCACAAACAGACAATGGGCCTTGCAGTCAGCACTTTGCGAGGACAAGATCATGAAGACGAAGTTATAAGTGATGCTAACAAGTCAGTGTTTGATTGGTGCAAGGATGGTAATGTCAAGAAGATGGACGTGTTGTTAACCCGAGGAGAAAGTGTTAATGTTAAAGATGATCAGGGAATGACTTTACTTCACTGGGCTTGCGACAGGGGACACGAGGATGTAGTGAGATATCTAATAAAAAATAAAGCAGAAACAAATGCTCAGGATGTTGATGGGCAAACACCGTTACATTATGCTGCAACATGTGACTTTTTGACAATAGTAAAAGAACTGTTACAATCTGGAGCAGACATTTCCATTGCCGATAGTGACGGCTGCCAACCAATGGATGTTGCTGAGAGTTCAGCGGTGAAAGAATTACTAGGTAGTAAAAATCAAGAGTCTTAATTGTTATTTATCCTAGGTACAGtagaaccttgattatccgggctcgttgggactgagctgaacagtccggataatcgagagtcctggtaatcgaaaatatgaatattaatgagccaaaactaaaactgaatgactgaacaagtggagcgtgaaatttatcttagaaacaaattaatcagggctcagtgaaatgcactgCCGTAGCACAGCGCGCGTGAGCTTAATACacatacagatttgtgttttgaagtgaaacagtttgaactggagtttcattacttactTTCAAGGGATgaagttttgctgcggatcttaaatatggctaattaatattcatgaaaaactgggaccagctaagcaagtccagataatagaaaaatccggataatcgaggttccactgtaactGTATCAGCTTTGAAAAATTGTGTGTGTCAGCTTCCAAAGCTgaaaattaatatttattttgtattaatAACAAAAGCTGCAAAATAATACCAAGGGCTCACTCTGGATGTCCACTGGTGGAAAGAGTGAGTTTCTAAATCATTCAGGAGATTATTTTTACAAGATATAATTTatttgatttgtaaatatatGGACCAGGcaaacatacatgtagtcaACTGATGTAACAGAGTGGAATGACTTATATGTTGTAGCCTGCAGAGAAGGCTTATTTTTGGGTGGCTTAGTATTTTCTTCACGAAAACGATCTTCAGTTATGAATGAGGAGATTGGGAAGACTGGCAAATATGATCAAGAGGGTGGTTGTCAGCTTCTATGGTTTGAAAATTCAAGATGGCAGCCTAACTCACTAACAATATTTTCAATACTGCACTCCTCCACCAAAAAACACCTGCACTGCAAGCTATGTATACTGAGCCACACAACATACCTTCAGTAGAAGCTTGATCATTTGAGCTATGATCAAATCAAGTTTTGCTAAGTTGAACTGTAAGCAGCAAGTAAAACCCATTTTTTGCTGATAAATTTGGGTCATATAGAATCAAGGTTAACATCCAGACAAAAGAATAAGAACTTGAACAGAAAATAGCTGTAGTTTAATATAGTAACGGTATAGATTTATTACCTTGCTTCTGTGCTTGCagtttgtttctgttgtgtTTTCAAGACATGCTTACTTTACCTCaacacttaaataaagtcctactactaccactaccactactacctcAAACATTTATAAGGTTTAATCTTCTGAGTGTTAACCCTTTTACAATTAATGTAATGATGACCAACAAAAGCATtccttttaaaaataattaaattcaTTGTATTTATTACCAAATTATTACCACAAAATAATACAGCTGTTAAAAGAAATAGTTTACAACTGCTttgttttaaagtgcacctaaccccaaaatattttttctgctAATATAAAACTGTTCCccttttccaaaaacatgtagcctttatttccagttttggacttttttaaaagcttcaaaacttacgataaactaagcattGCCTGTTtcagtcagaaggggcatgggtctatttcTGGTTTTACATcgcaaactgctttgcatacatgtttacaaagacttgctgcgacgcaaatcagtttgtgacatcaaaccgggaatagacccatgccccttctgcctcggtcgtgaaacagatgatGGTTAGCTTTCTAATCTTTatagcctataaaaagtcaagatttggtttaaaagagtgctattcgccacttccacatctcccataatacactttgttttgGCCCCCAAAATTTTCATAAGCATTGTAAGTCCCTAGAGAACTTGAAGACAAtagttatgcaaaatttttggGGGGCAagcaaagtgtattatgggagatgtggaagtggtgaataaggcacaatgcattttgaacaggtgcaaagatttattttagtgaaaaaaaatgtGGGGGGTAAGTTTAGATTACCAGAGTGGTGTGCTATGCTTGAAAATATGGGGAGAAACTGTAAAACAGTACTTTGTTGATAATACAATCCCCTGCATTTACGAACCATTCATTACAGCTAAGTCCATAGAGGTATAAAAATACAATCTTGTTTCTGCAGAGTATTGCCATTgaatttgcttttaaaaattCTGGAAAAACAATAATTAGCCATCTACAATTTTCATTCCTATGTCATTTTAATGTAAACTGTATCTTCACTTATTTATAGCAATTTCACTTTTAATAATGATAACTAGAATTAATTACTAGAATTCATATTCAAAGCACGTATGATGAGAAGGAAAAATAATAATGGAAATAATTACATTCTTTAAATAACATTGCTTAAATATTTTATCAGAATGTGTTTGTTGCTGAAGAATTtccaaaagaaaagtaaagtcCCACTTTATTCAAGATGTGTCTATTAGTAAGTTGCAACTTGAGGTGTTCATCCCATTGCTTTCCATCCTGATTAAGGCATtagttagcctccttcgcagccattgtttgtgtcagtcctattctccctccccatcaacgtctgctgaaccgagccaaaCATTCCactccaggaactgaccaatcacatcgtggcttttaagtttcagtggctaagttcccgtagcctccatgtggccgttgtttgtgtcaatTCTATTTTCCATCCTgtttggatactcagacacaatgggaatggaatgtccggctcggttcagcacatgttggtggggagggcgAATAGGActaacacaaacaacggctgcaaaggaggctaggCGTTAGTAAGGTGCAGGATATTTGCCATAGTGCAAATGGCTAAAATTAAtaatcgcgtgatagctgatgagggcgcagcctaaatcagctatcacgcatagaaatcgagagcgaataatctaattgttttagtataaatctactagttgttcaaaactaaacaagcaaattatctaaattctcctcgcagacacttcgaaaacacaaagaaggaacgccattttgttgacaactgctactcactatctatcacagattatagttcaccactaaattttctccgattcttattggtttaaactgatcacgtgatgcgatagtgttcatccgcagagagacactatcagcccatagtgcccgtccaaggaaaatacccggatggatagtagtcttccgtgaaaaattttcgctactaaacaagcgttttgaagtgtttttgaagtagcgcgttgtttttttgacggcgttgttttttgaagtttttgaagtggcgtgcggaagaaaatttagtggtgaacaataaagacaatagagtgtttatgtctcagaactatcggctgatagttgcctcttggaaatttgatgttcttaaaacggaaaaagtgaagaacagctcccccAAAAaactgtcggccgactgttggtcaacagtcggccgactgt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V8X4	Acyl-CoA-binding domain-containing protein 6 OS=Danio rerio OX=7955 GN=acbd6 PE=2 SV=1
A2VDR2	Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus OX=9913 GN=ACBD6 PE=2 SV=1
Q66JD7	Acyl-CoA-binding domain-containing protein 6 OS=Xenopus tropicalis OX=8364 GN=acbd6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001129 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00887 all species →	ACBP	Acyl CoA binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR000582 all species →	Domain	Acyl-CoA-binding protein, ACBP	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR035984 all species →	Homologous_superfamily	Acyl-CoA binding protein superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24119 all species →	ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000062 all species →	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.16306.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.