Gene detail

Detailed information of pspe_0.1.m1.16670.m1 in Pachyseris speciosa

Genomic Location: Sc0000073:194480...196582
NR annotation: XP_015752022.1, PREDICTED: LIM domain only protein 3-like isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q3B8H4	Rhombotin-1 OS=Xenopus laevis OX=8355 GN=lmo1 PE=2 SV=1
Q8JFQ2	Rhombotin-1 OS=Danio rerio OX=7955 GN=lmo1 PE=2 SV=1
Q99MB5	LIM domain only protein 3 OS=Rattus norvegicus OX=10116 GN=Lmo3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR050945	Family	LMO/RBTN Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45787	LD11652P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0140297	Molecular Function	DNA-binding transcription factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15612	LMO2; rhombotin-2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala