Gene detail

Detailed information of pspe_0.1.m1.17618.m1 in Pachyseris speciosa

Genomic Location: Sc0000081:419711...422816
NR annotation: KAJ7389299.1, SET domain-containing protein 4 [Desmophyllum pertusum]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58467	SET domain-containing protein 4 OS=Mus musculus OX=10090 GN=Setd4 PE=1 SV=2
Q9NVD3	SET domain-containing protein 4 OS=Homo sapiens OX=9606 GN=SETD4 PE=1 SV=1
A0A140C435	SET domain-containing protein 4 OS=Artemia parthenogenetica OX=6663 GN=SETD4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan
PF09273 all species →	Rubis-subs-bind	Rubisco LSMT substrate-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044429 all species →	Domain	SETD4, SET domain	Interproscan
IPR036464 all species →	Homologous_superfamily	Rubisco LSMT, substrate-binding domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR050600 all species →	Family	SETD3/SETD6 methyltransferase	Interproscan
IPR015353 all species →	Domain	Rubisco LSMT, substrate-binding domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13271 all species →	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018023 all species →	Biological Process	peptidyl-lysine trimethylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0018026 all species →	Biological Process	peptidyl-lysine monomethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27277	SETD4; SET domain-containing protein 4	EC:2.1.1.- EC:2.1.1.364	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.