Gene detail

Detailed information of pspe_0.1.m1.17689.m1 in Pachyseris speciosa

Genomic Location: Sc0000081:1453016...1460833
NR annotation: XP_015762118.1, PREDICTED: uncharacterized protein LOC107341222 [Acropora digitifera]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HCK5	Protein argonaute-4 OS=Homo sapiens OX=9606 GN=AGO4 PE=1 SV=2
Q4KLV6	Protein argonaute-4 OS=Xenopus laevis OX=8355 GN=ago4 PE=2 SV=1
Q8CJF8	Protein argonaute-4 OS=Mus musculus OX=10090 GN=Ago4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000003 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16486 all species →	ArgoN	N-terminal domain of argonaute	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032474 all species →	Domain	Protein argonaute, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198 all species →	Molecular Function	miRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.17689.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.