Gene detail

Detailed information of pspe_0.1.m1.17927.m1 in Pachyseris speciosa

Genomic Location: Sc0000083:1265768...1292325
NR annotation: XP_029207876.1, eukaryotic translation initiation factor 3 subunit L-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.17927.m1

ACTCGAAGGACGCGGGTGAGCGGGCACAAAGGTTTTTCCTCTCTCTTTTCCGTTACTTGGCTGCTCGCGATGTATAAGCAATCTGACGAATACTCAGAAGGGGAGTTTCCCATGCCTGATGGCGGATCATATGGTGGAGAGTATGAACCCCCTATACATGGTCAGAGGTATGGACATGAGTCCAGTGCAGACTCAACCGCTTATGCGTACAATGTGCCTGAAGAAATCAGGAGattcattcatttctttcatcaGCATGTGACTGAgcagAATGTATATGAAATACAGTCCATCTATGAAACAGGCTTCAACAAGTTGACTGAGAGACACTATGAAAAATCTGCTTGGCCAGATGCAGATTATGTGGCCTCTATTGTGGATGGAGATTCTGTGTTTTTGATTCTTTACAAAGAGCTGTATTACAGACACATTTACAACAAGCTCAAGCCAACACTGGAGCATCGTTTTGAATCTTACTTCAACTACTGTGACCTGTTCAACTATATTTTGAACACAGATGAGCCAGTTCCTCTTAGCCTGCCTAATCAATGGCTGTGGGACATCATTGATGAGTTTATTTATCAGTTTCAGTCATTTAGTCAGTATCGATCAAAGCTGTTGAAGAAAGGAGAGGATGAGGTGGGAACACTCAGGGCAAACACCAAGATCTGGAATGTTCATAGTGTTCTGAATGTGCTGTACTCCTTAGTTGAGAAGTCACGAATCAACCACCAGTTGGAGGTGTACAACCAGGGAGGTGACCCTGACACAGTGGCAGGAGAATTTGGAATTCATCCTCTTTACAAGATGCTGGGCTACTTCAGTCTGATTGGACTCCTACGACTGCACTCACTGCTGGGTGATTACTTCCAAGCAATCAAGGTTCTGGAGAATGTTGAACTTAACAAGAAGAGTTTATACTCAAGAGTCCCTGCTTGTCAGATCACCACTTACTACTATGTGGGATTTGCATACCTCATGATGAAGAGATACCAGGATGCGATTCGCAGTTTTTCCAATATACTATTGTACATTCAGAGGACCAAAACTATGTTCCAAACCAAGTCTTATCAATATGAAGAGATAATGAAGAAAAATGAGCAAATGTACGTTCTGTTGGCAATTTGTCTAACACTGTGTCCACAGCGATTGATGAAAACGTTCACTCTCAGCTCCGTGAGAAATGCACTGACAAGATGCAAAGATTGCAGCGAGTAAGACATGCAGACGTTTGAGGAAACTTTCTCCTTTGCTTGTCCAAAGTTTATATCACCGGTGCCTCCAAACTTTGATGCTCCACCAGCCAATTTTAGCAGGGAACCATTTAATCTTCAACTCAAAGTTTTCATGAATGAAGTGTCACAACAGTCGCTCATACCAGTCATTAGAAGCTACTTGAAGCTGTACACCACGATGCCCATTGCCAAGCTGGCGGCATTTCTAGACATGgaCGAGAATCAGTTCAGGACTGAGCTGCTCTGTTTTAAGCACAAACAGAGAAACCTTGTGTGGACTAAAGGCACGGACGCCCTTGAAGGAGAACTTCAGTCTTCGTCCGAAGTTGACTTTTACATTGATCAGGACATGATTCATATTGCTGATACCAAAGTTGAACGGCGCTACGGAGATTTTTCATTCGTCAGATTCACAAGTTTGAAGAGGTTAACAAGAATATCCAGGCACTGCAGTGAGTGGAGCTTTGCGTCACAGGACGACAAACTGCATGGGGATACCTGCTGTGTTGAAATCAAAGTTTAACTTTCCTAGCCCTACATTCTGTTAAGATTACGCCTGAGCAAGTCAGTGTGGATTTTCCACATTTAAACTTGTACCAGTCCGAGGAGAGCTAGAAATAAAAGTGCGGTTCTCATTATCCAGTTCTGGATAGCCTTATGTCTTATTCACGGGGCGCTTCTCTCAGTAGGATTCAGTTAAACTTTGCTGAACTTAAGACTAAGTACTTTTTGTACAAGTTAAACTCCAAGAACAACAtgaaaaaaacaatagaaagcAAATCATTATCTGTTTTGGCGGTTTTACCACAGAAGAATTGACACAAAGGAAGACCTTGAAATGACCGGGCTTTCCCGATGAATTTCTTCGTGGCGTACTCAGCCGTATACTTTAACTTCTAATAAGTAATTTCGATAAACTG

Protein

Uniprot

Uniprot term	Description
A7SDW5	Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis OX=45351 GN=v1g169424 PE=3 SV=1
Q5F428	Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus OX=9031 GN=EIF3L PE=2 SV=1
Q6P878	Eukaryotic translation initiation factor 3 subunit L OS=Xenopus tropicalis OX=8364 GN=eif3l PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10255	Paf67	RNA polymerase I-associated factor PAF67	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019382	Family	Translation initiation factor 3 complex subunit L	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13242	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15029	EIF3L; translation initiation factor 3 subunit L	-	Translation factors	ko03012	deepkoala