Detailed information of pspe_0.1.m1.18427.m1 in Pachyseris speciosa

Genomic Location: Sc0000087:1561520...1588166
NR annotation: KAJ7376339.1, hypothetical protein OS493_035264 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05662YadA_stalkCoiled stalk of trimeric autotransporter adhesinMotifInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000859DomainCUB domainInterproscan
IPR008635DomainTrimeric autotransporter adhesin YadA-like, stalk domainInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR011049Homologous_superfamilySerralysin-like metalloprotease, C-terminalInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0019867Cellular Componentouter membraneInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan

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