Detailed information of pspe_0.1.m1.18658.m1 in Pachyseris speciosa

Genomic Location: Sc0000089:880010...918400
NR annotation: XP_044181637.1, general transcription factor 3C polypeptide 1-like isoform X1 [Acropora millepora]
Species Pachyseris speciosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q63505General transcription factor 3C polypeptide 1 OS=Rattus norvegicus OX=10116 GN=Gtf3c1 PE=1 SV=1
Q8K284General transcription factor 3C polypeptide 1 OS=Mus musculus OX=10090 GN=Gtf3c1 PE=1 SV=2
Q12789General transcription factor 3C polypeptide 1 OS=Homo sapiens OX=9606 GN=GTF3C1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001719 (this species only)

 Pfam domain
No Pfam domain signature was detected for pspe_0.1.m1.18658.m1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR035625
all species →		DomainTfc3-like, extended winged-helix domainInterproscan
IPR044210
all species →		FamilyTranscription facto Tfc3-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15180
all species →		GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000127
all species →		Cellular Componenttranscription factor TFIIIC complexInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006384
all species →		Biological Processtranscription initiation at RNA polymerase III promoterInterproscan
GO:0042791
all species →		Biological Process5S class rRNA transcription by RNA polymerase IIIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for pspe_0.1.m1.18658.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP