Detailed information of pspe_0.1.m1.18685.m1 in Pachyseris speciosa

Genomic Location: Sc0000089:1289660...1308805
NR annotation: XP_020617499.1, 60S ribosomal export protein NMD3-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6GNS360S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1
Q6P2Z660S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=1
Q96D4660S ribosomal export protein NMD3 OS=Homo sapiens OX=9606 GN=NMD3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21193NMD_SH3NMD3 SH3 domainDomainInterproscan
PF21192NMD3_OBNMD3 OB-fold domainDomainInterproscan
PF04981NMD3NMD3 family FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048899Domain60S ribosomal export protein NMD3, SH3 domainInterproscan
IPR048898Domain60S ribosomal export protein NMD3, OB-fold domainInterproscan
IPR039768FamilyRibosomal export protein Nmd3Interproscan
IPR007064DomainNmd3, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000055Biological Processribosomal large subunit export from nucleusInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0043023Molecular Functionribosomal large subunit bindingInterproscan

TOP