Gene detail

Detailed information of pspe_0.1.m1.18897.m1 in Pachyseris speciosa

Genomic Location: Sc0000091:1388548...1408230
NR annotation: CAH3014526.1, unnamed protein product [Porites evermanni]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.18897.m1

CAGCAAGCTATCGTCCTGATCGCACTTGAATGGAAGCAAGCGATTAAAGACAACGATTAGATCTTAATTTCACCGCGACActcaaaagaaaatattagattAGTTCGGTCCATCGTGGACTTTCCGCCATGTTGGTTTCTGGGCATGAAAGAATTCGGCCAGAAGTGTCACAGAGAGTCTGGGTACCAAGAGAGTTTGCGCCAAATTTACCAACATGGCGGCGCATTCGACTGAACATAGCCAAACTGAAGAatagacattttttttttcttagtgcTGAAATAgaaaaaccaatcatgactcaAAATAACCAGGACGAGTTTTTACTAAGCGGAGAAACGACTGGAGGAGGAGACAGCGATGAAGAAATTGAGGTCACTGCTGCAGAGGTCCTAGCTCAACTTGAACGAGCCTGGACGAATGAAAAATTTGCTCCTGAACTTTTGGAGAGCAAAGCAGATCTTATTGACAGAATACGTTATGTTCTAAGCAGTTACACACGAACAAGAATAGAAAAGATTGAGAAACATGTTGTCCATGTCCTTGAACAAGAAGCAGCAAGAGATGAAAATGAGCCATCACAGTTATCTCCAGAGGAATTGCAGTATGCAAAAGAGTGTGCTGATAGTATGGAAGGTCTCTTCAAGTCCTTAGCATTACAACACATGCCAGCAAACATGCAAAATATTGATAGAAAGAAAGCAGTTCCTAGGCCAAACATGGACAAATATGTGTTCCTCAAGGTCCTGGAAAATCAAGAACAAGTTATGATAGACCCAGAGGAAGATCCTATTGATCTGGAGAGTGGAGCACAACATATCGTGCGATACAGTGCTGTAGCACCTCTTGTTAGCAATGGATCTGTTGCTCTATTGTAAATTGGAGATTTGTTCTACCATGGTACTCAGACATGGAAAATACCACGGACTATTTTTGTATGTAGAGAAAGCTTTCATATGACATTAACACGTGTCAAACAGTACATTGGTTCACTGTCAGTTCACAAGATATTGACGCCACCCTTGTCAACATGCTCTTGTTTAATTTCTGCTGGATTATATTTTGCTTGCCTCTACTGGGGCCCATTCTATGATGGTGTTAGAAAACAGACTTGTAACAAGGATATATGTACTACATTAGGTCTTGAGTCTTGAGCGAACTTAAGTGTGGACGAGCAGATAAGAGAGAACACACGGTATCTGGCCAATCAGTGGTTCAGTAGCAAAGGTGTTAGCTCGTTTACACTGAGGATAGATTTGCTAATTTGCATTTTACGTGCGGACAAAATAAACGAGCGCGTAGGCAAAAAAAGGTCGAACTATTGACATTAAGCCTCTTTATTTGTTCACGCTCATAAAGGTTATTCGACAGTGGGAAGCACCGTAAAAGACAATGCGTTTTTGAAAGTATCCATCTTCACGGTTCGTTTGAAAAGTTTCTGCTATAGGTGTTCTATTTCGATTGTTTTATTGAGGATGACGTTTCGAAACGAGCTGATTAGGGTGGACAATGCCCGCGCAAATGGAGATTTGCTCTTGCTTTGATATGATTCTCATTGTTTTACACCTGACAAAGCCTCTTGCCCAGAGGTTTCAAAGCAGCCTAAGATAACTATGATTCCAATCCAAAGGAAACTTCGTCATCAAGGAGACCCGGGCTGTTAGACGAGACAATTTCTAAACGATTTTTCCGACCTAAATATCTGCTCCAGGAACCTATCCGAATGGGAAAAAGAGGCAACCTTCCAACAAGGTTGGAAACAATACAAAGTTCTTGATTTATTGGTTTTTGCAGAGCAGCATAAGCTTAGTTCTCCCTATGGCAATAGCTAAACCAATGGATCACGAGAAAGATGTTCAATCTCCAGCATTATTTACAGCACAGTATGCACCTTCAAACGCACCTTCGCACGTGATAGTGTTCTTTTTCCTGCATTGCAGATGAACTCTGATCCACTCCCCGGGGATTTTCAATTCGCATAACGTCTCCCACTTCAGTTGTATAGCTCCCATTATCTGTATTGCACccgggggtactaaaaaaattaatacggggaggctccgccccgaggtccgaccccttacccttttatataccatttttgacagcaaaggtacccctttcgtatactttccattggaaaatggtacccctttcacaaaCCCACTTAAGAACACTACATCCCCTTTCTAGCCCTTAGAATGAagtcttgtcattttcatgtagcgttcaataaaattaaaacagtacagtcttaaggtatgtgtgttcgaactatttttatgaaataaaggcccttttaaatacctgaatgacagatttccctaccctttcatatatctgaagcgtgaaaaaggtacccctttcgggcggtgcctccccatataggccattatagggagtaccccccccccc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99LZ3	DNA replication complex GINS protein SLD5 OS=Mus musculus OX=10090 GN=Gins4 PE=1 SV=1
Q499W2	DNA replication complex GINS protein SLD5 OS=Rattus norvegicus OX=10116 GN=Gins4 PE=1 SV=1
Q7ZT48	DNA replication complex GINS protein SLD5 OS=Xenopus laevis OX=8355 GN=gins4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007052 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16922 all species →	SLD5_C	DNA replication complex GINS protein SLD5 C-terminus	Domain	Interproscan
PF05916 all species →	Sld5	GINS complex protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031633 all species →	Domain	DNA replication complex GINS protein SLD5, C-terminal	Interproscan
IPR008591 all species →	Family	GINS complex subunit Sld5	Interproscan
IPR021151 all species →	Domain	GINS subunit, domain A	Interproscan
IPR038749 all species →	Domain	GINS complex protein Sld5, alpha-helical domain	Interproscan
IPR036224 all species →	Homologous_superfamily	GINS, helical bundle-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21206 all species →	SLD5 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0000811 all species →	Cellular Component	GINS complex	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.18897.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.