Gene detail

Detailed information of pspe_0.1.m1.19227.m1 in Pachyseris speciosa

Genomic Location: Sc0000095:565693...575971
NR annotation: XP_022790996.1, synaptotagmin-16-like isoform X2 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.19227.m1

CGAAACAACAAGAGATTAAATCACCGCACAGATGTCCGGTTCCATTTCCAACGAAGCCAGCAGTTTGGATTTCAAGACGAGGGTGCTGCTTAAGGTGGCCAGCAATCTTTGATTCATCAGATTTAAAGAAGCAGTTCATAGCCGCCTTAATTTGGAAGCTACATGACAGAAACAGTTCCAAATGGTTCTTCCCGGAGTGCCAACCCCGGCCATCGTGTTTATGGCGGTTATTGGCGGCTGTTGCCTTCTCTTACTGGTTTTATACCAGTGCTTAAAGGCTGGAATGTTTTTTAAGACCGAACCACCGGCCGACTCACCAGAGGAGAAAGATGGTTACGCGGAACTCGGTGAAGCGTATGGGACCGAAACAGATGACGATTACGTTGGGCCATCTTCCAAAGCAACAAGCCGAAGAAGTAGCTTTAATACGAGTGGGAGCAAATCGGATGGTGAGCTTGCTTTGGGTGACAGCGCTTCAGTTTATGGTTATGGTAAATACTCCGACGGGGAATACAGTCCTGCTGGAGCGAGGCGCGCTGTGTCTGCTTATGGGGAAGCAATTGACATCGGCCAAGAGGAATTTCTTTCAACTGCCGGGAGACTGCAAGTGTCAGCAAGCTATGCCCCAACGGCAGAAAAATTAGCGGTAACTGTCCTTCGCGCCGAAGATGTACCGACAAAGCACAGAGGAGGTGCTGCTAGTGTTCAAGTCCGAGTTGTACTGCTACCGGCAAAGAAGcaacgttttaaaacaaaagcaaaaccaTCAACCAATCCTAACTTTCACGAAACATTTACATTCAGTCGAGTTTCTCAAAGCGATTTGCATGAAAGTGGCCTGAGACTTAGGTTATATGGTCACGAGAAGTTGACTCGGGATAAACTGCTTGGTGAAATGACAATCAGTCTTACAGAGTTCGACCTGGAAGGTGACGGAGAAGCGCTGTGGCGAACTCTCACTCCAAGAAATGCCCTGACCgctTCTGACTCCATGTACGATTTGTCTGACACTGCAAGCGTCAAAAGTTACGGATCATATGGCTCAGTGTCCTCCCTTGCAATGGCCCAGAGTGCGGCTCCCGAATTGCTTGTATCTCTGTGTTACCAGTCTCTCACTGGCAGATTAACGGTGGAAGTACTGAAAGCAAGCAACCTGCGAAATGTTTCAATGCAACGTGCACCAGATTCATACGTGAAAGTGACTTTGTTGTCATCATCTGGCAAGCAAGTTGCAAAAAGTAAAACTACCATTAGGAAGAGTATGGCTGATCCAGAGTACAATGAGAGTTTCATGTATGAAATATCAGAGAAAGATCTGCAGCTGGTCACTTTGACTGTTGCGGTTATTGCAATATCAAGGGCGAGGAAGAAAAAGGAGATGATTGGCTGGTTTTCACTGGGAAAAAATTATAGCGGGCAAGAAGAAATCCGACACTGGAACGACATGattcaagaaaaagaacaaactaTAAATACGTACGTGAAAGTGGCGATGTTTAATTCCATTGGACAGCAACTCTCTAAGAGCAAAACATCAATACGCCGCAGCATGTGCGACCCAGAGTACAACGAAAACTTCGTGTTCCAGATTATTGAATTTGAACTACCCAGTGTAAGCCTTATGTTTTCCGTGGTCAACATCAAAAAGATGAGGCGGAAGGAGATCATTGGGTGGTTTTCTATGGGCCGTGATAACACAGGAGAAGATGAAGAAGCACATTGGAAAGAAATGATAGAAGCTAAAGGTCAACCCAGGAAAAGATGGCATATATTAAGTGCTGTAGATTATTGAAACAGTGATATCTTCAAATGGAAACTGACCGTATTTTGTTATTTAACGAATTTAATTGTATATAAAGAAACGAATTCTCTAGTCTAATGTTTATTTATAAGCTCggtatttccatttttttaaactgagaaaaatttattttcttgttttctctttttctcgCTTTTGAAATTGGCTGCTTTTATTTTTGGTAGTGTTATGTTTGTTACAAACgttttttttctgcatttttACGATAACGGTTGTCATAAGGCCGGTTTACACGCTACGATTTGTTTGGTCGATTTGTCGGCCCGACGGTGCCGGGGCGAGAATCGTACGTCTATTTTGACTCCAGATTCTCCGCCGATTTGTAAAAATGAAAATCGGTCCGATTCCAAATATCTGTTGCACTGCCACAGATTTTTGGAAGTTGGCCGACATTCTCAAAGAAACCACTGCGTCAATCAAATGCTTTGAAAGGGTATGCGTGTCCATGCGCAAAAAACACTTGACAGGCATTCAATATGGCGGACGTCAAGAGGAGAGAAGGGCAAGGCAAAGGCAAGGGCCCGGTCTATTGATGAAGAGATGTTAATCGCAGAGTGGACCAAGTACCCGTGCCTTTACAACAAATGTGATAAAGACTATCATGATCGAAATAAAAGAGATATAAAGATCAGTGATTCTCAGTTGACTCATCAGCTGGTAAAAAGCCCCAGCTTCTGTTCGATGCCAGTTTTTGACCCAAGCACAATGTGGtttccttcttcttttctttttttttttttcat

Protein

Uniprot

Uniprot term	Description
O35681	Synaptotagmin-3 OS=Mus musculus OX=10090 GN=Syt3 PE=1 SV=2
P24507	Synaptotagmin-C OS=Diplobatis ommata OX=1870830 GN=P65-C PE=2 SV=1
Q9BQG1	Synaptotagmin-3 OS=Homo sapiens OX=9606 GN=SYT3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008	Domain	C2 domain	Interproscan
IPR043541	Family	Synaptotagmin-14/14L/16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46129	SYNAPTOTAGMIN 14, ISOFORM D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005543	Molecular Function	phospholipid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19328	SYT14_16; synaptotagmin-14/16	-	Membrane trafficking	ko04131	deepkoala