Detailed information of pspe_0.1.m1.19594.m1 in Pachyseris speciosa

Genomic Location: Sc0000098:972255...996622
NR annotation: XP_020603842.1, neuronal acetylcholine receptor subunit alpha-7-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q15825Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens OX=9606 GN=CHRNA6 PE=1 SV=1
Q9R0W9Neuronal acetylcholine receptor subunit alpha-6 OS=Mus musculus OX=10090 GN=Chrna6 PE=1 SV=2
Q5IS76Neuronal acetylcholine receptor subunit alpha-6 OS=Pan troglodytes OX=9598 GN=CHRNA6 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13894zf-C2H2_4C2H2-type zinc fingerDomainInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF12756zf-C2H2_2C2H2 type zinc-finger (2 copies)FamilyInterproscan
PF02932Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR041661DomainZN622/Rei1/Reh1, zinc finger C2H2-typeInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR006029DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR002394FamilyNicotinic acetylcholine receptorInterproscan
IPR050888FamilyZinc Finger C2H2-type Transcription RegulatorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24406TRANSCRIPTIONAL REPRESSOR CTCFL-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0022848Molecular Functionacetylcholine-gated monoatomic cation-selective channel activityInterproscan
GO:0045211Cellular Componentpostsynaptic membraneInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0043035Molecular Functionchromatin insulator sequence bindingInterproscan

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