Gene detail

Detailed information of pspe_0.1.m1.19998.m1 in Pachyseris speciosa

Genomic Location: Sc0000102:110009...120088
NR annotation: CAH3167844.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.19998.m1

ATGGCGTCCGCTTCATGGGAATCGCAAGAACATGGCCAGGCTTATGGACGTCGCAAAGTTAAAATCACCATTTTGGCTTCTGAATGGGGCTCAAACAAGGGAGAACTTTCCACAGTAAACAGAGAATTAGCCATTCAGTTGGCCAAGTCCTCCAGTGTGGAAATTACATTCTTTGTGCCAAAATGTAGTGAAGTGGAGAAGGAAACAGCTTTTACCCACAATGTGCACGTTCTGGAAGCCAAACGACGGCCTGGTTATGAAGAACTGGAATGGCTTAGCTTTCCACCAGAACAATTGCAAGTAGACATAATTGTTGGTCATGGGGTGAAACTCGGTCGCCAGGCGCAAATCATCAGAGACTCTCACAAATGCAAGTGGGTGCAAGTTGTACACTCAAACCCAGAGGAAGAAGGGATGTTCAAATGTTATCCAAATCCAATTTCGACGGGCGAAGAAAAGCACAGTGTTGAAGTAGAGTTGTGCAAACTAGCCGATTTTGTTGTTGGAGTTGGGCCGAAGTTAACTGAGGCCTTTCGTTCGTACCTTCGTGGGTATAGACGAGATGAGTCCATTTTTGACTTTACTCCCGGAGTGTTTGACGAATTCAAGAGTGTTGAACAGGTTCCCACAGAAAGAAAACATCGGAGTGTTTTGGTGTTTGGCCGTGGAGATGCAGAGGATTTTGAATTACAAGGGTTCGATATAGCGGGAAGGGCCGTTGCGTCACTACCTGACACCCAGCTTGTGATCGTCGGAGCATCTGATGGAAATCACGAGGAAGTAGCGAAACGTTTTCTTGACTATGATATACCTGCTAACCGCTTGAAGGTCAGACGCTATGAAAAGAGCCGAGAAAGTTTGAAGCGATTATTATGCGAAGTAGATCTTGTGCTCTTAACCTCCAGAACAGAGGGCTTCGGGTTGACTGGTCTTGAGGCTCTTTCAGCTGGTCTACCTGTGCTGGCTAGCAAGAATTCTGGGTTTGGAGAAGCGTTAAACAAAGTACCATTTGGTTCGTCTTTTGTGATCGACTCAGAAGATCCCGAGATATGGGCTGCAGCCATCAAGAAAATCTGGGAGAAAGACAGGAAGACTCGACTGAGGGAGGCTGAGAGTTTGCGAACATCCTATGACAATGAATACAGTTGGACCAAACAAAGCGATGCCCTTCGGTTTAAGATGATGAACCTTGTTCGTGCTTTTCTTCACCTGAAAATTGATTGTGAGGCTGTGAAAGGACCTGGTGCACAGGACATAGCTACAGAAATAGGAGAAAAGCGCGGAAAGCGGAAAGTAGAAAGCGCGGCGGTCTCACCAAACAAGTCAAACCAACCGGAAGATGTGCGTTCGCCGTCAAATGCCGGTAACGGAGGCATTCCTTCCACCCAAGCAGTTATAAACGTAATTGCATACAAGCGCATCCAACAAGTTGACCCATCAAAACCTGAGCAGTTAGATGACTTCCTACAGTATATGGAAAAGGTGCgcaaagtaataattattgacACTACAGTCAGCAGTTTGATGATCACAGTAGAAATCAGGTCTGTTAAAATCCTTGAAGAACTGTTGGAAGACTATGACAGTGGTCATCTCAATGAAGTGGTTCAGAAATTCCTGGTGACAGACGACGTTCTGCAGGAATTTGGCCTGACCGAGGTGAGACTGGCGACAACCATTGCTTTTCGCGAGTActtcgcttgtctgaatttccTTACACGTCGAGatCTCATTCGAGTGCGATTGAATTGTGAGACTATCACAGGACATTGCATACAGGGAGCACCCAACACCTTGAATCAGCAACAAGGGGTAGACATGACGGCTTTGACGGGACAAAAAGGAGGAAGTGGATGCATGCTATCTGGAACACAAGTTTTGCAATCCATAGAGCACAAGTACTTTCAGACAGCTGACCCAGCTAATCAAGAGGAGAGGAATGCCTTCCTGAAATATTTGACAGGGGTGGGAAAAGTGTTGTTCACCGTTGCTGAGGAAGGCAGCTTAATTGTCACCTTGGAATGCAGATCTCTGCTTCTCGTCGATCAACTCTGGGAAGACTACTTCACAGGCCGTTTAAATGAAATAGCGCAAAAGTTCCTTGTGACAGAGGACATTCTGAAGCCGCTTGGCCTCGTCAACGTGAACCTTGTGACACAGATAGTGGAAGAGGAGCACAGAAAATGTCGGGATTATTTTAGGATTCGTTCGTACAATCGTAAGTTGATCCTTTTCACAGTAAATAAGACTTAA

Transcript

pspe_0.1.m1.19998.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
-	-	-	-

PANTHER

PANTHER term	Description	Source
PTHR46401	GLYCOSYLTRANSFERASE WBBK-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009103	Biological Process	lipopolysaccharide biosynthetic process	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan