Gene detail

Detailed information of pspe_0.1.m1.20935.m1 in Pachyseris speciosa

Genomic Location: Sc0000112:565368...572653
NR annotation: XP_020624320.1, uncharacterized protein LOC110061806 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.20935.m1

TCTCGATATTACGACTCGTTTGTCCTGATAACCTTTGTGATGCACGTATACGTCAATGAACTCCCTTATTCACAGCTAGTAGtcatatgcaaattacttttcACTCATGCAGTATCGCTTTAGGATTGCTTTCTGTGGAAACGTTGAAACTtgaaagaaatacaaaaattaGAACTTGCGACAAGAAAAATCTATATCGGATTGAACACTAGAGTCAGTGAACGGGGCTCGAAAATCTGAGTTGCGAGCCGAAAAAGAGGGCGGTCAGTGTGGCCTGGAGTGTGGCACGGTCTCGTCACGGTACTTGACAAGTCATTATATAACATGGCAGTTAAAATTTACAGTCTCAGTGAACTACTGATCGCGATTTCATTGATTCTGCTGGTTCTGCTGGATGCAAGTGAAGCCAAACATTGGGCTAATGTTAATTGTGGTAGTCCCAATGAGGCTGTAGTTGCAGTGGATCCAGGAAATCACCGCTATTTCCCATATTTTGTCAAACTCCATCGCTGTTCAGGCTCGTGGTACTCAGATAGTCCTTCCATGCGGCATTGTGTTCCTAGCAGTTACGAGGAATTTAACATCCAGGTTTATTCACTCTTGGAAAATAAAGGCACCACTATCGCTGTTAAAAACCACACCCGCTGTACGCATGAATGCGTCAACAGTATTGACAATTGTGATTTGTCCGTGGAGGACTGGATCGAAGGTGAATGTGCGTGTAAATGCAGGTACCCGGATGGACCACCGAAAGAACTGGCTTGTAAGGAAGGTTTCAGGTGGGATCAACATACTTGCAAGTGTGAGTGTGCAAGGGCGCCTGAGCACTGTCCTCTGAGAATGACTTGGAGCAATGAGATTTGTGGTTGCAAATGTCATGACAGTGTAGTAGATGGGTGTACAAAAGCGAAGATGGGGATTGATGTCGACTGTAACTGTGTAAACGTACTGGCCAGTACTCACAGGATTGCAGCTGATCCTCATTACCACGTGTTCATCACATTGCTGATTGGTCAAGCGGCGCTTATCATTCTCCTGATCTGTGCTCTGGTGCACTGGGTACGAAAAAGAACGCGACAGAACTCGGCCCATTCCGCTCTCAACAGATTTGATTCAAGCAAGACTGATGACCATATTGATCAGCCCTATTTGGAGGTGGCTGTGGAATCAGGATCTACAGATTCACTGAAAGACTCGAAGTACTCATCTGGTGATGACGTCAGCTGTACGGCTCCATTGTCTCCTAAAGACAAAGAAACCAACATATGATAACTGGCTGAGTCTCAGTGGCAGAAGAACAACCAACTGTATTCCATAGGAGGATGGAAACATATAGCAAAAAGTCTGCTAATTTTGGAACCAGAGAGGAAAAATTAAACCCGTGGTCATGTGTTGTAAGTTGAGAGAACGTCTCTCATAAGCGATCGATCGTTCAAAAAACGGGCAAAATTCGCTAAAATCATTTTGTAAAGTATTAAAATCTGACAATACCGACCATAGTACGATGTTACTCTGACGTTTTCCATTTTTCATTGGTAATCAACAGAGACAGTACTGGTAGTCATGGTTGCAAGGTTAAATAAGATAAAGTTTAAGCGTGTTTCAGCATTGAAATCATTGAGGTCGCCAGGATTATATTCCAGTGCTGATTGTTGACGTCATTATTAACATCCGATACGGAAGCAATGTTGCTTGAAGgatatgaaaattaatgaaTGTCTCCGCTACGTTGCCTCGTTCCTGCAGAGGTCTCGAAAGAGAAATCAGAATGTTTAGAGATGAGCCACCTGCCTGTACATGGCGTTTTAGCAAGTGAAATAACCCACAAATTATAAAATTAGATTCCTTAGGTGCGTtaagttttttaaaaaattacttttaaatgTCAGTATATATTTCATTTAGTATCTTATCTTTTCTaggaaaagaaagttgttgtaCTCAGTGCTATAATAGTAAATGAAGTATGGTCACCTATCAGTATTTAGATTAGTGACAAATGACAACGAAAATTCCAATATGACAGTTTCTGTATCAAAAGTTTTGATTTCGAAAACGTAAATCGAAAATTGTCAACCATAAATAGGTGTAAGGAAGGCTCTGggattttatgaaaaaaaaaaagcgatgaCTTATTGGCTCATAAGTTACAAATGTTACAGTTAATGTATTTTGTTGTAGTTGTTTGCTCCTGTCTATtagttatttcttttttttttttccaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11633	PLATELET-DERIVED GROWTH FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0031954	Biological Process	positive regulation of protein autophosphorylation	Interproscan
GO:0070851	Molecular Function	growth factor receptor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03160	TNFRSF5, CD40; tumor necrosis factor receptor superfamily member 5	-	CD molecules	ko04090	deepkoala