Gene detail

Detailed information of pspe_0.1.m1.21585.m1 in Pachyseris speciosa

Genomic Location: Sc0000118:1337090...1343524
NR annotation: CAH3023592.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.21585.m1

CTGATGTTGTCGAGTCAATGTAGTATTCGGTGAATGTAACAgcctgaaattttcaaagaattttcAAAAACGACTTCCTCTCCTTGTAACAAGAGACTTCTTTTGGATAGCTGGCATATGATAGATTCTTAAATGCACAGTGTACTGTTCTAGGTGGGGTCTCCTTAGAAACAGACATTGTTCTTTATATTACTGATGAAAACACACGACAGGTCACAAGTTCGCGCTTTTTATGTGCGAGCTTGCATCTTCGGTGGCGAAGGTTTTCTTCAATGGCGGGTATTTAATCAATAGCAGTTAGGCGCGAAGACCTTCGACTTCGCAGGCGTTCAAGGCCGGTGATGTCCTTCAAAGAGCCGTGAATTATTTATAGCTGTGCGAAGCTGAATTTATTGAACGAAACTATAGATATCGGGAGTGATTTTTGTCTCCGCTGAGGTCTTCCAAGAGGTTTAATAGAGATATTGGAAGTTATCCTATGCTTGGAACAGCCTCCAACACTTCAGAATTAACTCTgtcaaacacaagtaaaatggCCTCAACAAACCACGACCAACAACTTGGCAGCTACGACTCGGAGCTCAAAAAGGAAGACGGCAGCGCTAGTCCAAACGAGATTGAAAAGAGCGAAAGCAAGGATACCTCTTCGAAGGATCCGAATGTCAAGCCGCCGTACTCGTATGTTGCGCTGATCGCGATGGCGATTCGAGAGTCTTCCGAAAAGCGGTTAACCCTCAACGGGATTTACCAGTACATTATCAGCAAATTTCCCTTCTACGAGAAGAATAAGAAAGGATGGCAGAACTCCATAAGACACAACTTGTCACTCAACGAGTGCTTCATCAAAGTGCCTCGAGAAGGCGGCGGTGAGAGAAAAGGTAACTACTGGACCTTAGATCCAGCCTGCGAGGAtatgtttgagaaaggaaactaCAGACGCCGGCGTCGAATGAAGAGGCCATACCGCCAACCTACTCTACCACACAGCAACGGAATGCTAACAGATCCACGCGCTGCGGCGTACGGGAACTATATCGCACCCAAGTGGTCGGCGTACAACCAAGTTCAGAGCGTTCCCACGGCAGCGGGGTCTTGGCGAACTGCTCAACCGGCTGGTCCTCTTTCGTACCCCTGCAATCCTCAGACCTCCAGAGTTCCACCAGGATATGCGGTTGCACCCTACATGGGGATGGGATCGACAGTTGGAGTTCCCGTCAGCTCATACACAGGTACGCAGTACTCGACACAAATCCAGAACCCCGTGAATAACCAATGTGCTGGTTACGGAGCAATGGCAATGCCCAGTGTAGGCTGCCGTAGACAAACTGATCACACTGCAGCAGTTCATTTCAATCCATATTGGAATCCGCCACCCGACAAGCATATATAGCACACTTTCGATGTAAACCTGTGAGATTAATGACTGCTAAACGCTTCTACCATCTAGATATTTTATTTATATGAAGCCTTATGAGAATATCCTTGGACACGACTGGGACAGAGCTAAAGAGAGACTAAACAAATCACCAAAAATCCCGGGGATTAAGAAAATTGTACACTCCGAAAATAGAGATTTTGTGTAATATTTGACTATTATATTTACTTTAATCATTAAATCAAGTCTCTCTGATATGGTATCTGTGGATGCCAGTCAGGGAAACAGTTGACAAACAAATCAAATTGTACCAAATGATATATTATCTATAATACAGCAGACAGAGAAAGAGACAGAgcgagagaaaaaaataaacagaagaagaaataagaaaataaagtactTCGATTTATTCTTTTTTCGCACCGTTTTCATATGTTCAAAATTTAGACCGTAAACCCTAAACCAGGTAGTAAATACATTAGCACACTTTTGTGAAATGTTATTAGCATAGGTTGAATCTTTCTTAGTGTCAACGGCGTCAAACGCCGTCTTAGCATGCAGTTTTACAGGCCGTGGAGTgagatttgatttcatatctGCGATCTAGAGGAACACTTATGACTGAAAAGCTTTATTGCTAGATCTCTCGTTTCAATTTTTTAGCTTTGTGGAGTTCGTCTTAGCATTCTCGATTTTAATTGTGAATATTTCTTCGAACGGGCGAAAACTTGTCACTCACTTGTACAGAAGCTGTCTCAAGCGTTCGAGGAAGTACGAGTAAATCGCATTTTTGTGAAAGTAATTCATTTGCCAAGGCGGCGATATCACTGTCTTTTCTATGTCCTCAATGCAAATAAACTGTTAACCAGGATATCTGGCTGTTTTGATTTTCTTGAGTAAATAAGGGATAACAAAATCAACTGGCGC

Protein

Uniprot

Uniprot term	Description
Q4VUF1	Forkhead box protein L2 OS=Bramus lutescens OX=3370998 GN=FOXL2 PE=3 SV=1
P58012	Forkhead box protein L2 OS=Homo sapiens OX=9606 GN=FOXL2 PE=1 SV=1
Q6VFT7	Forkhead box protein L2 OS=Bos taurus OX=9913 GN=FOXL2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766	Domain	Fork head domain	Interproscan
IPR018122	Conserved_site	Fork head domain conserved site1	Interproscan
IPR050211	Family	Forkhead box domain-containing protein	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR047515	Domain	Forkhead box protein L2, forkhead domain	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR030456	Conserved_site	Fork head domain conserved site 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11829	FORKHEAD BOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09405	FOXL; forkhead box protein L	-	Transcription factors	ko03000	deepkoala