Gene detail

Detailed information of pspe_0.1.m1.21677.m1 in Pachyseris speciosa

Genomic Location: Sc0000119:1128191...1139968
NR annotation: XP_027039327.1, E3 ubiquitin-protein ligase TRIM71-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.21677.m1

ATGGAGTCTCTCTTGAAAAATCTCAAAAAGCACGTTGAGTGTTCAATCTGTCTGGATACTTACACCGAGCCCAAGACAATTGCTTGTCTGCACACATTCTGCTGTGAGTGCCTGAAGGAACACGCATTGAAAAGCGAGAGAGGAGGGAAGTTTAGATGCCCTGAATGCCAGGCTGAAATTTCCGTCCCTGAAGAAAACCGTTTCGACAAACTACCGACGAGTTTTCATCATAATAGTTTGGTAAGTCTTCTTGCTGTGCGACAAAGCGGCGATGGAAGGGAAATCGGTTGCGGGATTTGCAAGACTGAGAAAAGCGCGGAAATCAATTACTGCTTCGACTGCGAAAAGCTGATGTGCAGAGATTGTAAGATCGCGCATGAAGTGTTCAGGGAAGCGGGCTTCAAAGGACACAAGGTGACGCCAGTCCAACAGTTTCAATCCCAAGACTACGAAGCGGTGCTGAAAAGGCAGTCGTTTTGCCCTcaacagtatcacgaacgagaGGCGACGAGGTTTTATTGCAAGGAATGTCAAACCTCTGTGTGCCAGATTTGCATTAACACGAAACACAAAACCCACGAAGTTGAACCACTGGAGGAAGCAGCGGATGGCGTGAAAACCAATATTCTGGCTCGAGTCGAgttgacaaaacaaaagaaaaatgccTGCAGTGATGCGATTCGTAAGATTGAAGAAACAGAAGCAGAGATGGAGAGTAACATCGCATCTGCGAAACGTGAAGTTTCCCAAGCAGCCGATCAAATGGTCGCGAAGATACGAGAGCGCGAGCGTGAGAACATCACCGCCCTCGAGAAAACGCGCATGTCGAGGGCGGAGAAGTTGAACTTGGCAAAGAaggaaattcagtccttgtccAAACAAGTCGATCAAGCAGTCGAGTTTGCTGACAACCTAGTTCAAAGAAGCTCCAGCGCTGATATCATGCAAAGCAAAAAGACTTTGGAGCAACGTTTGGAAGACCTTGAGAAGATTCAAATCCCAGCACTTCCGGTTGGTTCATATGCGAAGTTTGTCCCAAGTTGTGCTCCAGAGAATTTGAGCCTTGGTATCATAATAGATGCTACAGTAGAAGGCCACACTCAAGACTTTCAAGCTGGTGTAGAAGGCAAGTTTGTGGTCCGTCCCAGAATTCATAAAGACGAACAAGCAAACAGAGTGAATTCTACGTTTCACGTTGATGTGCTCGTGGAACCCACTGAAAAGGTATCAAGTTTGACTGTTTGCGACCAGAAAGATGGAAATGTCCAGGTGAAGTTTATACCAAAAGTTCCTGGTTGCTTCAAAATCTCTGTTAAGGTCAACAGAGAGGAACTTCCAAACAGCCCTTTCACGGTTCAAGTGAAGGAACGAATAATTCAGCTGGTGGGAGAATTGGATTTAAAGGGAAAAGTTAAAAAACCACGTAGCATTGCTGTAAACAGCAAAGGGCTGACTGCTGTAGCTGATGGTGAAGGCCACTGTGTAGTGACATTCAACAAGGAAGGAAACTTTCTGCGAGAACTGGGTTGTAAAGGGAAGGGTGTTGGGCAGTTTAACACGCCAGTTTATGTCACTTTTCTCAATGATGACGAGATTCTGGTGGTGGAGGAATTCAATCATCGAGTTAAACAGTTGAACGTTCATACAGGGAACTTTGTCAGGAGCTTTGGGAAGAAAGGGACAACAGATGGCGAGTTTAAGAACCCTCTTAGCATTTGTTTAGATGGTGAAGGGCACTTTGTTGTAACTGAGTACAGTAACAGCAGAGTCCAGGTTTTATCAGAGGATGGTAAACCAGTGTTTAAATTTGGAGAATGTGGCCCAGGAAAACTTGACCATCCGAATGAATGCATTTACCACAAAAACAACTTCATTGTATCTGATCGGAGAAATGACTGCTTAAAAGTTTTTGACAGTTCAGGAAAGTTTTTGTACAAGAAAGGAGAAGAAGGGAGTGGTGATGGACAGATGAAGAATCCCTGGGGATTATGTGTGGAGCAGTGTGGCAATCATCAGAATCTTCTTGTGTGCAACTATGCCAATGGCCGAGTTGACCAGTTTACAATGGAAGGTTGCCTCACTGGAAAAACTGTTGCAGAACTGCAAAAGCCCTCAACAATAACCACAACACCAGATGGGCGAATTCTAGTTTGTGATTTGAAAGCAAAAAAGATATACGTCTTAAAatacAAAAGCTATTTTATTGATATGATCAGAGAAAGAGCCAGTAGTCAACATGGTGACCAAAATGGTTGCAGCTTGGAATGCTGTGTGAAAAAAGATTGTTTGAATGCTACAGTGGAACAAAGGGAGCCACTGAGTGATGTCAAGAACTCAGATCTCACATTTAGAGAACTCACAACCAATATATGGGTGTCTCAAAAACCTCAGAGACCTTCTGGGACTTCAAAACTTAGGCCCTCTGGCTGCCTCAAAAACTCAGACCTGAAAAACTCAGAACTGTGGAATTCGGCAGTAAACAACGCTTGTCCTAATGGCGCAGTTCTCTTCTGTGTCGTGGGATGGAAAATGAGCGAAGGAATTAACTTTTCTGATGATCTCGGAAGTCTAATTAGATGCGTTGTCATGCCCAAAGCTGGACAAACTCACTACGAAAACCTTTGCATGAAAGCTATAAACCAGTCAATAGGTCGCGCCATTCGCCACAAAGGTGACTATGCAACAATCTTGTTACTGGACCAACGTTACGGTTCCACCagaataaagaaaaacttgccagGGTGGATCTCAAACAGACTTCAGCATCACGCGCGCTTCGGATCTGCATTTGCCCCATTCGCAAGTTTTTGTTATTTGTACAAGttgtttgTGGATAAAAGAGAGCAAAATGGCAGCGTCAGAGAGTAG

Transcript

pspe_0.1.m1.21677.m1

Protein

Uniprot

Gene family

Uniprot term	Description
F1R345	ATP-dependent DNA helicase DDX11 OS=Danio rerio OX=7955 GN=ddx11 PE=2 SV=1
Q6AXC6	ATP-dependent DNA helicase DDX11 OS=Mus musculus OX=10090 GN=Ddx11 PE=1 SV=2
O14147	ATP-dependent DNA helicase chl1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=chl1 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF13307	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047153	Family	TRIM45/56/19	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR006555	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan